RNA id: AMCG00019154



Basic Information


Item Value
RNA id AMCG00019154
length 645
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00019154
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5930704 ~ 5939597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAGTTCCACTGTACCAGGAATTATATTCACATAAATCTGTTTGCATCGTTCATCCTGCGGGCGAGCGCTGTGTTCATTAAAGATGGCGTACTCTTTGCAGATGAAAACATGGATCATTGCTCCATGTCGACGATATATATCTTCACTACATTCTCCACCTCCAAGTGGAAATTAGTTGCTTGCAAATCTGTCGTTGGGTTCTTTCAGTTTAGCATCTTAGCAAATTTCTTCTGGTTGCTGGTGGAAGCTTTGTACTTGCAGACGCTCCTGGCgtttacatttgtttcacagaaaaaatatttctggtGGTACATCTTAATTGGATGGGCGGTGATGATTGTGTGGGTCATCACTCGGATTTATTACGATAACCGAGGgAGGCTTGCGAAATCAACCTTATTTCTCATTCCACTGTTTGGCGTGCACTATGTGGTCTTTGCATTCTTCCCTGACAACACTGGAGTCGATGCCAGGCTTTATATCGAGCTTGGATTGGGCTCTTTCCAGggtTTTGTTGTGGCTTTGCTCTACTGTTTCTTGAATGGAGAGGTCCAGGCTGAAATGAAGAAGAGGCTGGGAAAGTGTCACAGCCAGGGTTACTTGACTTTCACACAAAAACGCAAACCCCTGTTCACAGAGAGCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39824 lncRNA upstream 180645 5749817 ~ 5750063 (+) True G31820
TU39782 lncRNA upstream 353009 5572772 ~ 5577699 (+) True G31799
TU39654 lncRNA upstream 747669 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 803079 5093881 ~ 5127629 (+) True G31663
TU39572 lncRNA upstream 900613 4972972 ~ 5030095 (+) True G31622
TU39884 lncRNA downstream 225134 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 247795 6187392 ~ 6187723 (+) True G31872
TU39890 lncRNA downstream 248838 6188435 ~ 6188700 (+) True G31873
TU39891 lncRNA downstream 249712 6189309 ~ 6189552 (+) True G31874
TU39894 lncRNA downstream 323040 6262637 ~ 6262840 (+) True G31877
AMCG00019151 mRNA upstream 245647 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019148 mRNA upstream 360172 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019147 mRNA upstream 367053 5549593 ~ 5563655 (+) True AMCG00019147
AMCG00019146 mRNA upstream 387773 5533680 ~ 5542935 (+) True AMCG00019146
AMCG00019143 mRNA upstream 540346 5366466 ~ 5390362 (+) True AMCG00019143
AMCG00019156 mRNA downstream 29845 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019159 mRNA downstream 372151 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019160 mRNA downstream 415663 6355260 ~ 6380345 (+) True AMCG00019160
AMCG00019162 mRNA downstream 545481 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019163 mRNA downstream 667375 6606972 ~ 6668145 (+) True AMCG00019163
TU39314 other upstream 2720025 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2720025 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2834282 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3783145 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 1480904 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2405858 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2405858 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3321777 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3389882 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile