RNA id: AMCG00019156


Basic Information

Item Value
RNA id AMCG00019156
length 1464
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00019156
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5969442 ~ 5980521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTTGGTGGATGAAATGGCACAGATGCTCTGGAAACAGGTCTTCCAAGAAAAGCTGCTTTATCTCATCGGCCTGCTGCGGAAATCCCAGAAGGATCTGCTCAGCAACCTGTTTGCTCATGACAACAAGGAGCAGAAGAAAACCAGGGGCTACCTCAAAGTCATCACCGTGGTCTCCAAGTTTAAGAGCTCGCTGGACAGCCTGATGGATGTTCTGGAcagcactactccacactacatAAGGTGCATCAAGCCTAACACAGCCTGCCAGCCACTCGCCTTTGAAAAGGAAGAGGTCATGGCACAGCTGGAAGCCTGTGGCATTGTGGAATCCGTCAAAATCAGTGCAGCTGGGTTTCCTATCCGAATTCCAAACGCAGCCTTCATGAAGCGATACGGGCTGATCGCCAACGTGAAGATCTCATCCAAACAACTGAGCAGCTTAGGGTCAGAGGCCAGCAAAGGCATCCTGGGCCCCGCAGTCAGTGACATTCTCTGCATCGTCCTGAAGCGCCCACCCGCTCCCTCGGACCCCCATGACCGCCAGCCTCACAGTTCACTGGTGCACTGTGGGAACACCAAAGTCTTCATCACTCCCGCTATGCTGGAACTACTGGAGGCCTTAAGAAACCAAGTTCTCTGCCGCCAAGCGTCCTGCATCCAGCGCTGTGCGTTCCTGGTTGCTGAGGAGAGACATTCTCAAGAGGCACACGGCCGCCACCTGCATCCAGAGAGTCTGGAGAACGTGGAGGTTGGAACTAATGTCTCCAACAGTAAAGTCTCCACCTCTGCCTCCTGGAAAACACGCTGGCCAGGGCTGCTCTGTGCTCAGGGTCTCCTCACCCAGACTGCTCAGGAGGAAGATCATCAAGTGGCAGAGGGCCAGCACCATCATCCAGAGAAGCCAGACGACAAGAAAGCGTATTTCAGTTTCACTCGAGGCTATGATGGAAGCCCCAGGTCTCAATCAGATGGCCGGTCTGAAGAGCACCTACCAGGGTCAGAGGCCAGCAAACGTATCCTGGGCCACGCAGTCAGTGACCTTCTCTACATCGTCCTGAAGCGCGCACCCGCTCCCTCGGACCCCCATGACCGCCAGCCTCACAGTTCACTGGTGCACTGCGGGAACACCAAAGTCTTCATCACTCCCGCCATGCTGGAACTACTGGAGGCCAAGCGTCCTGCATCCAGTGGTACTGGAGGCGCTACTGCAGCAGAAAACAACAGGCCAGCCAGAGACACGCAGCGACTGTCATCCAAGCAGGCAAGTGTCCACACGCTGTCCGGGGCTGCTCTGGGCTCAGCCTGTGCATTCCTGGTTGCTGAGGAGAGACATTCTCAAGAGGCACACGGCCGCCACCTGCATCCAGAGAGTCTGGAGAACATGGAGGCAATCGATCGACCATCCATTCCGACAATCTTCACTGAAGTTCGCCAACGTCCGCCCACATTCACAGGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39841 lncRNA upstream 37501 5930704 ~ 5931941 (+) False AMCG00019154
TU39824 lncRNA upstream 219379 5749817 ~ 5750063 (+) True G31820
TU39782 lncRNA upstream 391743 5572772 ~ 5577699 (+) True G31799
TU39654 lncRNA upstream 786403 5177934 ~ 5183039 (+) True G31690
TU39620 lncRNA upstream 841813 5093881 ~ 5127629 (+) True G31663
TU39884 lncRNA downstream 184210 6164731 ~ 6167316 (+) True G31867
TU39889 lncRNA downstream 206871 6187392 ~ 6187723 (+) True G31872
TU39890 lncRNA downstream 207914 6188435 ~ 6188700 (+) True G31873
TU39891 lncRNA downstream 208788 6189309 ~ 6189552 (+) True G31874
TU39894 lncRNA downstream 282116 6262637 ~ 6262840 (+) True G31877
AMCG00019154 mRNA upstream 29845 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019151 mRNA upstream 284381 5673977 ~ 5685061 (+) True AMCG00019151
AMCG00019148 mRNA upstream 398906 5566296 ~ 5570536 (+) True AMCG00019148
AMCG00019147 mRNA upstream 405787 5549593 ~ 5563655 (+) True AMCG00019147
AMCG00019146 mRNA upstream 426507 5533680 ~ 5542935 (+) True AMCG00019146
AMCG00019159 mRNA downstream 331227 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019160 mRNA downstream 374739 6355260 ~ 6380345 (+) True AMCG00019160
AMCG00019162 mRNA downstream 504557 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019163 mRNA downstream 626451 6606972 ~ 6668145 (+) True AMCG00019163
AMCG00019169 mRNA downstream 709394 6689915 ~ 6691084 (+) True AMCG00019169
TU39314 other upstream 2758759 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 2758759 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 2873016 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 3821879 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 1439980 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 2364934 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 2364934 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 3280853 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 3348958 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile