RNA id: AMCG00019157


Basic Information

Item Value
RNA id AMCG00019157
length 4399
RNA type mRNA
GC content 0.43
exon number 18
gene id AMCG00019157
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6165183 ~ 6191211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGTTTTGAATGTAGCCTGGATGAAGCAGATTGATAGAGTTTGTACGGCTGTATCACTTTGAAATAAAGTCACCAAGCGTCTGCCTTATATTCAGAGTTTATGAGAAACGTTTTGTGttcaccattttattttcaagatgAATAACTCTGTGGAAGAGGTCGCCGCCTCGTTAGTAAGGGAATATCTCAGTCGGAAGGGACTGAAGAAGACTATGACCAGCATGGATCAGGAACTTCCCCGCACAGACACCAGCATCAGCAACAGGAGCGATCTTCGCAGGATCCTGCATTTAGAGTCTCTTTATAAAAAGAATAAGACTCAGGAGGCCCCTCTGAAAGCACTGCTGGAGGTAATTGTAAAACACCACATGGAGGAAAACACTGGTATCAACGCTAACATCAGCAGGGGAACAGAACAGTGTGCATTTTTACTGCAGCAACAAGACATAGTGCCCAAGTCTAAGTCCACAGCATCGTCATCTGTTAGTATGTGCGATGTATCAGACGAGGAGAAAGGAGGAAGCACAGCTGTGTCGGACTGGAGTAAAACTGATGTTTACAGAGCTGCTGAAGAGGCCATTTTGCCTTCTCACAAGCTGCTCTCACCACAGACATCTCAGAGTCGCTCCACAAAGCCTCCGAGGCGCATCTTGAGCCGCAGCTCGTCCTCCGAAGGCGAGAGAGATGGAAACACGGTGCCTTCATATGTAGACAACGAGAACAGATTTGGTGTTTCTCTAGAAAAAAAGAATGCGTTCGCAGAgatccagaaaaacaaaagcaatcgCATTCTCCGTGGGATGATGTCGGGGCCCATTGCCAGTTCACAACAGgaaaataataaaaagcgaCCACTTAGAAGGCCATCGGGATCCAATCTTATTCCTCAGCTGAGAAATGAGGAGCCGAAAAACGATTGTACTTCATACCTGAGTGAAGCCGCCCAGATGACGGTTCAATCTAACTTGAACGCGGCTGTGGGAGATCCCCTTTCAAGTGTGTTCAGTGAAAGGGAACCGGGCAAACGCCACCGAACGCAAGACCAACACAGACCCAGGCTGCAGGCTGACCCTACAGACATGCGTGGCTTGCAGCAGCTCGACAACGTGGGGAAGGAGCTGAGAAACACGGACAGAGGTGAAGTACAATGGAAGGACAAGTTTCCCAAgaagATGTCAGCATCCAGTCCTAAAGTAGAAGATATGCCTCTGAAGGCGATGAAACTAgATGATATCAATGATGAAGAGGATTTTTGCGAGGTTACCAGTGTACCGATTCTGTCCCGTGCTTCCCAGCTCAATGTGGATTCTCATCCAATAGACCTACGTCTTGCATGTgACCTCAAGGAGCTTTTGTTCGGCTCCAGTCTGAATTGTTTCAACGAAGAGTGGAAGGGTGGCCCTTGCGGAGTGCTGGCTTCTGTCCAAGCCTGTGTCCTGCAGAAGCTGCTGTTCGAAGACACACGAAGCAGCTCTGAAACACAGAAACTGCAGCCATCCAATATCTCAAGAACCAGGTGCCTTGTTTCGGCGGTTGCGGAAATCTTATGGCGAGCAGGAGAACAGAAAAGAGCTATAGTTGCACTATCTTTTCGCAGAAGACATTTCATTCCAGCTGGAAGATATAAAGCAGACGGGATTCTGGAAACGATAACGCTGAATACTTTGAACAACCTAGACGACTTAAAACTGTTTCTGGAACACAATATCCATCAGttCGAGCTGGGTCCCTCTGGGTGCATTTTGCTCGTTATATCAGCCATTCTCTCCAGATCTATGGAACTGGTGAGATTAGATTTTGATGTGCCTTCAAACACACTCATTGGAGCCCATGGTTACTGCACACAGgAACTTGTTAATCTTCTGCTCACTGGGAGAGCCGTTTCAAATGTGTTCAACGATGACATCGAACTGGATTCTGGAAATGGAAATATCACTCTTCTGAAGGGAGTCAAAGGGCGGAGCGACATTGGGTTGCTGTCTTTGTTTGAACATTACAACGTGTGCAAGGTGGGCTCCTATCTGAAGACCCCCAAGTACCCCATATGGGTGATATGCAGTGAAAGCCACTTCAGCGTGCTCTTCTGCACACGCAAGGAGCTGATGAACGACTGGAGGATCGAGAGGAGATTCGACCTGTATTATTACGACGGCCTAGCGAATCAGCAAGAGGAAATCCGCCTAACCATCGTCACATCTCAAAATTGTAGTCCGGATGTAGACAATGACCTGGTACCTCCTCTTGAGCACTGCATCAGGACAAAGTGGAAAGGCGCCATGGTCGACTGGAATGACAGCGAACCGATTCTTTGACGTAATTGTGACCCCCGAGCAGAGAAACGGACCGACATCAATTGGCTCGTATGTCATCTTTGGGACAAACCTGACAGATAAGAAATGAAACCGGAAACACTGCTGGCTAAGACATTGAACcctatgctttaatttatttatttttatacgaATAAgcgtattattattgtcatcatcatcatgtagTCTGTAATCATtctaatgtatgtattcagtCTTTATGATTTGGGAATCTGGTTCGCTTGATGAGAAAGGGATGAATTCTTCCTACTGACTGTGTTTTTAGGGtttatctgtctttttttacCAGCTGAATTAGTATCCTTCTTTCCCGCCCACACAGGGGTAAATAATCAATCAAGATGCTGTGCCACTCTGTGACCCTTTCAGAAATGTGTCCAAAccgttaattattatttttcaaacagtttgtatatgtacagtatttgaGAATTACTATAATTGTGCCTTGTTGTTATCCAtttatgtttacatatataccttattttcttatttattactttcaaatacattattttaattcaaactttattttatatgattttaattaaaagcagacttttgttttgggaaaaaaagACTGCAGGGATCATTGTTTACATTGTGCCTATTGTTGTGTAATGCTCTGCAGTAGGGTCAGCCACAGGGGAAtctattttctctttctatttACAGTAACggcatattatatatttctatgaGTTCCATAGATTCATGTGTCAGTGAGGTCAGCAGGATACCATGAAGTCCTGCATTTGCTTTGTCACTTTGTTTTATGTAACGCCAGCAGGTTCACTGTGAGGACACTTTGAATTTTTGACTGCAACAGCTTCGTATCCTCTTCATGTTAGTGAAGTCACAGATAAAAGGAAATATATGGCACTATGAGGAGGAATTGGTCGTTATTGAGGTATGGTTGCCAAGATGTTGTTGGAAATCCCTCCCAGCATCTCAGCAATGTCTTTGAATACTGGgctgtaaataaaaagagaaaagaaaagcattaagTCCTAAATGTGggaataaagaaacaaagactAAGCATCACGTGTGAGAATAGTAAATCTGATAGGCTTCACATAAGTAAATAGACACCAAATGAATGTTCTGGAACCATCCATAACACTAACAGAGTAGGAATCGGTTCAGTACTTTGtgtagctttttgttttttacaaggCATCCATAACTATAACTTTGTGTAGATCAGATCAGGATTACAAACCATTTCTGATGCAAGATATTGAATTGTAACACCAGGAAcctcttctgttttgtttgcattgcacACAGTGTGAGTTGTGGCGCTGTCTTTCATGACAAGGCCTGTATTGGAGTAGATCACCATTTGCATGCAGGCAGTGCTCTTTCTTTAAGGCACTTCAAGTCTCACGCAGAGTTCACACATTATGTTGTAGGCCACCAGCTGTGACCTCCACCGGCTTGAACTGCACACACAGATTGATGAACAGGTGGAAAGATCGCAACAGGCATGAATAAATATTGTCTGTAAGTTGTGAAAAACACGACCTCACCAGAAACAGTGAACGTAGGGAACATCTATGTCCTATTGCAGTTGATGGGTGAAATGTGTTTGGTTCAGAAATAGTTTACAGACTACCTTGCCATGCTGTGTATAGAGATCATCTGATGATGGTTCACCTGGAACTGATCTTATGTGATCAAGTGACCACGCTCCTCtcagcactatatatatatatataccttaaGTGTTGGGTATCAATGACTCGCATCAACCGTTGTCTTTTGGCTTCTTTTAAAGTGAGAGAAGCTGCTCTTATATAGCTTATATAGCAGAGTAACTGCACAGATGGGCAACAGAATAAGCAGTATATTGGAAATGTCTCGCTGGCTTCTCCCATCATAGTGGCTGCAAGTTGTGCCTCTTTGCAAAGTTCATGGGATTTTCTGCTTTCTGCAGCTATAATAAGTGTTTATTcccaaaatatgaattaatataatgtatactgTAATTCAATACCAAGAAAAACATGTGCTGCTGAAGTCTGtgaataaaaacatgctttgtgaGCACAATGTGAA

Function

GO: NA

KEGG:

id description
K22647 MINDY3_4; ubiquitin carboxyl-terminal hydrolase MINDY-3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39892 lncRNA downstream 646 6163989 ~ 6164537 (-) True G31875
TU39861 lncRNA downstream 178387 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 237590 5923714 ~ 5927593 (-) True G31833
TU39837 lncRNA downstream 262546 5902372 ~ 5902637 (-) True G31831
TU39835 lncRNA downstream 347750 5817076 ~ 5817433 (-) True G31829
TU39895 lncRNA upstream 71426 6262637 ~ 6262838 (-) True G31878
TU39899 lncRNA upstream 73480 6264691 ~ 6265136 (-) True G31882
TU39965 lncRNA upstream 489414 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 496292 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 497649 6688860 ~ 6689516 (-) True G31932
AMCG00019158 mRNA downstream 3681 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 19719 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019153 mRNA downstream 203036 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019152 mRNA downstream 391486 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019150 mRNA downstream 493197 5635702 ~ 5671986 (-) True AMCG00019150
AMCG00019161 mRNA upstream 243301 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019166 mRNA upstream 424439 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019164 mRNA upstream 478742 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019165 mRNA upstream 489489 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019170 mRNA upstream 586193 6777404 ~ 6781144 (-) True AMCG00019170
TU39603 other downstream 1229187 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 3986533 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4081912 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4081912 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4454640 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7470905 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8300680 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8300680 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8760631 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9501271 15692482 ~ 15721452 (-) True G33381

Expression Profile