RNA id: AMCG00019161


Basic Information

Item Value
RNA id AMCG00019161
length 558
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00019161
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6434512 ~ 6451611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACCAAAGAAGAAAGAGGAGCCCCCCAAGCCAGCACCCAAGGCACCCGAGCCCGAGCCACCAAAAGAGCCAGAGTTTGACCCCAAAAGTGTAGCGaTTGAATTCACAGCTGAGCAAATTGAAGATTTTAAGGAGGCTTTCTCCCTGTTTGACAGAACaccaaataatgaaatgaaaatcacGTACGCTCAGTGTGGAGATCTGATGAGAGCTCTGGGTCAGAACCCGACCAACGCCGAGGTCATGAAGGTGCTGGGCAGCCCGAAGGCAGAAGAAATGAACTCCAAAATGATGGACTTTGAGACGTTCTTGCCCATGCACCAACACATCTGCAAGGCCAAGGATCGGGGCACCTTCGAGGACTTTGTGGAGGGACTGAGGGTGTTCGATAAGGAGGGGAACGGCACAGTGATGGGCGCTGAGCTGCGCCACGTGCTGGCCACACTGGgagagaaaatgagagaaGATGAGGTTGATCAACTCATGGTGGGCCAAGAAGACGCCAATGGATGCATAAACTATGAAGCGTTTGTCAAGCACATCATGGCAGGATAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12749 MYL3; myosin light chain 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39899 lncRNA downstream 169376 6264691 ~ 6265136 (-) True G31882
TU39895 lncRNA downstream 171674 6262637 ~ 6262838 (-) True G31878
TU39892 lncRNA downstream 269975 6163989 ~ 6164537 (-) True G31875
TU39861 lncRNA downstream 447716 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 506919 5923714 ~ 5927593 (-) True G31833
TU39965 lncRNA upstream 229014 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 235892 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 237249 6688860 ~ 6689516 (-) True G31932
TU39969 lncRNA upstream 238225 6689836 ~ 6692303 (-) True G31933
TU40037 lncRNA upstream 772978 7224589 ~ 7224997 (-) True G31993
AMCG00019157 mRNA downstream 243301 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019158 mRNA downstream 273010 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 289048 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019153 mRNA downstream 472365 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019152 mRNA downstream 660815 5755405 ~ 5773697 (-) True AMCG00019152
AMCG00019166 mRNA upstream 164039 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019164 mRNA upstream 218342 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019165 mRNA upstream 229089 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019170 mRNA upstream 325793 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019174 mRNA upstream 417903 6869514 ~ 6897553 (-) True AMCG00019174
TU39603 other downstream 1498516 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4255862 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4351241 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4351241 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4723969 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7210505 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 8040280 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 8040280 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8500231 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9240871 15692482 ~ 15721452 (-) True G33381

Expression Profile