RNA id: AMCG00019163


Basic Information

Item Value
RNA id AMCG00019163
length 5707
RNA type mRNA
GC content 0.45
exon number 32
gene id AMCG00019163
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6606972 ~ 6668145 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAAAGGTACCAAACCCACGATTGCCCTGTACAGGAGCTCAAAGCAGCATCGTAataaaATGCCACCGAGGGGCTTTAAAATACAAGCAACACATctggacagcagcagcggaAGAGGTAAAGGTAGAACAGCCAAGAACAAAAGGAAAGTCAGCTGTCCCTTAATTCCCATGGAGCGCCATCTCGTCTTCCTCTTTCACAACAGGAAGAGGGTTGACACTCCTAGCTTGGACCTGACCAGAAACAGTGTGGAGGGAAAGACAGAAGAGAAATGGAAGGGGGTGATGAAAGGAGAAGCAGAGGCCGAGGCAAAAACGAACATTGAAAAAACTCCTATGACTTGCCATAACCGGAGCCCCCAGAAAACAACTGTCTCCGACGTCACAGGGGCCGGCTTCGTCCTGGGGGGGCTCGAGCACCAGCGCCAGGTGCAGGGAAAGCAGCACAAACACGGAGCCCAGCACCGATGCCAGAGAGCACGGGAGCAGATCCCACGCCAtcttctcccctctccctctccctctcccactctcgCTCTCCGTGAAGGGAGGACCACAATGGCCCTGGATCCCCGACCAAAACAGATGAGAATTGCGGATGATTTTGCCCACCTGACGGCATCCCTCATGACAAATCCCAACAGGCTCAGCTGCTCTGCTGTTTGGACTTGTTCGTCTCCCTCTGCACCTGAAGAATCACAACTGCAGGAGAAATGGCGGATTGCCAGCAGGTCTCTCGTGGAGGCTGAAAGTGTCTTTGTGAACTGCCTGTCTGACATCAACACTAGTGTTCTTCAGCATCTACTGTACCACAATACGGTCGATCAGAAATGGCAGGTGCAGATGAAGCAACTGCTGCAGCTCAATGAGAGATTCCAGGCCCTGTGGGACCAGACCGGGAAGAGGTGCAAAGCACTGCAGCAGGGCCTCAACGCGGGTGGCCCCCTCGGCCCCCGGGACCTGTACCTCGTCAGCAGCATCACCGGGGTTCAGGAGGGCTACGTACAATACTTCTCGTCCTTCACAAGCCTTTCTGTGGTCGGAGGGTTTGATTATCTTGCCAAGAAGACAAGCAGCTATTGGAAGAAGAACAAGGACCATCTCAGCAAGTTCCTGACTACTTCCCAAAAAGCAGAGAACTCTGTATCGGTCAGTCTGTTCAGGATCCTTCACGAGCGCATTAGGGAGCAGTCTACAGGCGCTGATGAACTGAGTGAAGCTCTGAGGGTGTATGTAGATCTACAGAGCCACATTAGCCAAGTTCTGGACGAAGCCTCCCATACCAAGGTCTTGTGGAAATCTCTGGGGCAGAAATTAACGGATGTTTTGCGCAGCCCTGAGCGCAGGCTTCGAGAAGACAGCAGGAGTGCCCCGGTCTCCCTCTCGCCTGGGAAATTTGGCCATGAGAGGATACTGCTCTTTGATGATGTGTTAGTAGTCCTTCAGGGCTCCGATATCCACTGCTATGATCTCACGACGCTTTGGGTTGAGGAGACAGACGATGCATCTTCTGAAAGGAGGAATTTGAAACTGATTACCCCAGAGGAGATATTTATGTTGTACAGCCAGGAGGCACAGCATGAGGTGGTGTGGCACTGGAAGATCAACCAGTCCCTTCGCCAGTGTCTATGTGGGAAGAGGGACTACCCACTCTGGGGTAAAGGCAGCCATAGTGAAACACCAAGCAGCCCCCCGGCTTGCCGATTCGCTGCTTACACCTACAAAAATGAGGGCAGGTTGAAAAATGCCATTTATGAAGGCTACTGGAATCAAGGCAAGCCACATGGGAAAGGCACATTAAAATGGGAAGACGAGCGTAACTATACAGGAGACTTCAAGGATGGCCAGGAACATGGGTTCGGAGTGTGTCTGATTCCTAGACTCGGAGAAGAGGGATATGACTGTTACAAGGGTCACTGGAGGGaaggaaaaatgcaaagatATGGAATCTGTGAgtACAGCAACAACATGGTGTACAGAGGGTACTTCAAAGACAACCTGCGCCACGGCTTTGGGATTTTGGAAAGCTCTCGTGTTGACAGCAGCTCGATCAGATATGTGGGACACTGGGAGAATGACAAGAAACATGGCTATGGGGTCCTGGAAAGTACTGACAGTGGGGAGACTTACATCGGCATGTGGCAGGAAGACCAAAGACAAGGCCCGGGGATCGTGGTCACGCAGTCTGGGCTCTGCTATGAGGGCACCTTTCACTGTGACAAGCTGACAGGCAAAGGAGTTTTGCTGTCCGAAGATAACGCTCTTTATGAAGGGGAATTTACCGAAGACCTGCAGCTAAAAGGAAAGGGGAAGCTGACATTTCCAAATGGCTACACTATCGAGGGGGTTTTCAGCAGCACATTTGGAAATGGCTTACAGGCAAATGGGGTTCTGAAAACAGCGGGCAATGATGTCACCGCCGAGAACGCCTCACTGCTACAGTTGGGAGTGGATAGTCTCCCAGTGTTTGAGAGATGGCAGGGCATCTTTGACCCGTTCATGGAGTACCTACGCACAGGAGCCACGGACGAATCCGAGGAGGCCTTCGTTGGTTTCCATGTAGAGAGCGGCAGGTCACTGAGGAAGGCTGTCAATGAGGAAGTAGCTGCTCAAAACCAAAGTGATACATCCCTGCCTTATCTTTCGTGCAACAGAAAATCTGGAGAACTGCCAGTGAAGAACACGGACTTCATTAGGGAGCTCAAGAGTCGATGGGACAGTGATCAGCTACAGCAGTACTTGGAAAAGTCATTCCAGTCTCCCATGCACCCCTTGGGCAAGCTCCTGAAGACCCAAGTCCTGGTGTTTCGGGCCACCTATTCGGGAATGGGAGCAAACAAGCACCTGCTGTCCATGGCCCAGGAAGAGGTCAAATCCCACGCTGAGAAGATCCTGGAGCTCATCACggatTATATCCCTGTGTCGCATAGAACGGGCTCTCAGGAAGACGTGACGAGggAGGAGATTAACTGTTACACCCTGGTCTTGCCCCTGATCATGCCGGCCTTCTACCCCGAGCTCTCGATGCTCTACATGCTGTACCACGAGAAGGATGATGCCCTCTACTGGCAGGGTGTCGTGCACCTGGGCCTGCTCTCTGACACTAAGCTGCTGGAGTTCCTGGATGTGCAGAAacACCTGTGGCCGCTCAAAGATCTCCACCTTACTAGCAATCAGAGGTATTCTCTAGTGAAGGACCAGTGCTTCCTTTCAGCGATCGAGTGTTTCCAAAAAATAAGCACTACTGCTGACCCTCGGGAGAAGATTGACACTATGTTTCGGACGTTTGAGGAGATTGAGAAGACGGTGTCCCGGCACTTGGGGGCTGAGTTGCACCTCATTAGGGACATGATGGACCcggagggagaaggaggaatCACTGACTTCTTACTAACTGCACTGGAGTCTTGTTTCCAGCATGTCCAAAAGCAGGAGATAAGACAAGGCCGGTTCACAGACTCACTCTGAACACGACTGGGACGGACTAGATACCTCATCAAACGCTGGTCAAGGCcatgattaaattattataataattcaatattcTCCAAAGCTTCTCAAACCCAGCTGTGGATATAAGAAAATTAAGAGCTAGGCAAGCTGTCCTCAAGCCCTGCGCACGCTGGTGGTGCGGTCTGAGCGCTGCATCCAGGTTgccactgttttctgtttgtatattGACATGAGTGCTCACACATGCATGGTGCCTTACACTGGATATGAATCTCCAATCCCAATGCCAAACGACGAGCTGTCAGTGTATCTCAATGTTACTGAGTTGAACACAGTattgtttgttatattttagtGTCAGTGCAAGAACAGGAGACTTTCAGATTGTGTTGTTGCGTTTGTGTTTTCTCCACATTGCCAGTCTGGGATTTAtgttctgtattatttaatgtttacagataatatataaacatagaaGTTATTTATGGGTCAAGCTCTACAGCACTGTATTTACCCTGACGTCACTTTTATGTAAATCAACACTGACATGCAAATGAGGGAGTTTATTCAGCAGCTGCAGTATATTTATAGGATAACTAGGATAAagtatttcaaaagcatttctgaacaagcaaattaaaaaggctttttaaaattaaatgtatttatttttataactacagcatatttcattttctgttcagATGTATAGCACTTTGTTTTAACAGTATCGTATTTTTCTTCATTGGAATTAGCTTGAAAGGTGACAGTATGGTgatatattcataatataattaaaattcaattgaAGTAGACTGAAACAATAACTTAAGAATACATCTGTGTCCTACATATACGGATGGATGTAGTTTCATCtacgggggaggggggtggcAGTTGGTCAATGATTTTTACAGCTTTGGTATCGTCTGCTAATATTGTTTCCCAGAAAGTTGTTGGTTTTCTGCCACAGTGCATATCAATGCACATAAACTAATGACAGTAGAAAGGgggatttattttgattttacatACTCCACAATACACTGAATAATTATGTTTAGAGaatcaataaaacacaatttcaaaatCTTGGCTCTGGGGCCcacatttaatctgtttttgtttccaacTGAATcttaattttcatgtttttttgtttgttttgatctgaTCATTTTCAGGTTACAAATCAAATTACACCTGTGCCAGTTCCTGGGTTTCCAAGCTCCCCTAATTGATATTGTTTAAAGTCCAGATGTCTGGAATTAAATCCAATGTTCCACTGTTCCCATGCAGTATGAACACGTATGTGTCTGGTGCAGTGTATTTACCAACTGAGCCTGTACATCATTAATTTGCAACCTAGTCTTGTTAATAAAATCTTCAGGGAGCAACAAATTAGTCACCGTGTTCAGGAGAGACTGAACAgacctttttttctctctagtTTGTTTCAAACACCCATCTCTTTAAGAAAACAGTTTAATAACTTAAGAGCTCAGATGGAACTAAGATCCGGTGACAGAACTCcttttgatgttatttttataaattcattttaaattgtttctgtatttgtttagaaACACTCAAATCTATTGTACTTAAGAAATAAGTGTCCCTTATGTAGTTTTATTTGCGTTTGTTCCCAGAATGtattaaacagaaaagacaaaataGTGAATTGGTTATTATAGAGACAaaagtttatacatatattttcagaaaggTAGTCTACATTTACTGACACAAGTTACTTATTACTGTCCTATGCAGAATTATAGGCACATAATGCCAAGACATTAACAACGTCAAAATGgtgacaaaaaatatgtattgtgataataataaataagaaataagaaatattggTTACCTCCATAAAGTGAAAGGAGTATAAATGTTACTGCAACTTTGTTCACCACTGTATTTTGCCAATATGGTGAGCATCtagaacaaaaaatacatcaaatttaCATCGTTACACTTAGAGTTGCTTGCTGTTTCCATGTAAAGTGCTGATTAAACAGTTAATGTATTCCTAAATTAAGAGATGTTAACAGACAATGGAAGCCATGGTGTAAATAAAAGGCAAATGTTAAAtcatgtacattttgtaaacttGACTCTTTggtagtgtaaaaaaaaaaaaaatgtatagatcgaattaaaaatgctttcagtcgtacttgtttttattttgttctatacATTATAGAAGAGTGTGAAGCACTAGATGGCTTTAATAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39915 lncRNA upstream 170265 6435691 ~ 6436707 (+) False G31894
TU39914 lncRNA upstream 170983 6434199 ~ 6435989 (+) True G31894
TU39912 lncRNA upstream 189123 6417481 ~ 6417849 (+) True G31893
TU39896 lncRNA upstream 343690 6263011 ~ 6263282 (+) True G31879
TU39894 lncRNA upstream 344132 6262637 ~ 6262840 (+) True G31877
TU39947 lncRNA downstream 4753 6672898 ~ 6673177 (+) True G31914
TU39948 lncRNA downstream 10020 6678165 ~ 6678388 (+) True G31915
TU39966 lncRNA downstream 23577 6691722 ~ 6692280 (+) True G31930
TU39986 lncRNA downstream 151620 6819765 ~ 6820035 (+) True G31947
TU40036 lncRNA downstream 556487 7224632 ~ 7224997 (+) True G31992
AMCG00019162 mRNA upstream 40479 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019160 mRNA upstream 226627 6355260 ~ 6380345 (+) True AMCG00019160
AMCG00019159 mRNA upstream 294852 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019156 mRNA upstream 626451 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019154 mRNA upstream 667375 5930708 ~ 5939597 (+) True AMCG00019154
AMCG00019169 mRNA downstream 21770 6689915 ~ 6691084 (+) True AMCG00019169
AMCG00019167 mRNA downstream 36212 6704357 ~ 6705892 (+) True AMCG00019167
AMCG00019168 mRNA downstream 101098 6769243 ~ 6770217 (+) True AMCG00019168
AMCG00019171 mRNA downstream 155090 6823235 ~ 6832585 (+) True AMCG00019171
AMCG00019172 mRNA downstream 229673 6897818 ~ 6907983 (+) True AMCG00019172
TU39314 other upstream 3396289 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 3396289 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 3510546 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 4459409 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 752356 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 1677310 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 1677310 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 2593229 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 2661334 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile