RNA id: AMCG00019164


Basic Information

Item Value
RNA id AMCG00019164
length 3015
RNA type mRNA
GC content 0.51
exon number 13
gene id AMCG00019164
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6669953 ~ 6678328 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGCGACGAGGTGGTGAACGAGAGCCTGAGGCAGCAGTTCCAGGCTCTGCAGGCGCAGCAGCAGAAGCGCCTGCAGAAACGGCTGCAGAGGAAGGaggaggtgcagctgagccaGAGAGATCCTgtcagcacagagacagagtcCTTTAGCATCCAGGATGGGCTGAACCTCCTGGAGCTGGACCGAGAGCCAGCCGGTGGCATGGAAACCAGGTTACTGCAGGATGAGAATGGACAGCTGCAGGACCAGCTGCGCGAGCTGCGAGATGAGAGCGGCCGACTCCACAGACTCCTGAGCGAGAAGAACTTCGAGATCAAACACCTGAGGAAGAAACGAGAGGAAGACAGACTGGCTTTAGCAGGTACCTCGGGACTGGCAGGTGATGCAGCTGCCACGAAGATAGTAGAGCTGTCAAAGAGGAACCGGGAACTGACTGcggagatggagagggagaagacCAAAGTAAAGCAAATGAGCAACAGGGTCAAAGAGCTAGAGAAGGAGcccaGCAGTCCTGATGTGAAAGCTCTACAGGATAAACTGTCTGCAgctaattttaaaatgacagagtACCGCAACCAGATCCAAGCTGCGAAGCAAGAGCTCAAAATAGCACAAAAGGTTCTGGCCAGTGAGGTTGGAGAGGATGTGAACATCCAGCAGCTCTTGAGCTCCAGTGGGAACTGGCGTGGACGCTCCCAGCAGATCCTCGCTCTGCAGAACAGGGTGCGAGACCTGGAGATGCAGCTGGCACAGGGGGCTCAGAGGAAGCAGGCCTCAGAGCTCAGCTTCGAGGACATGCTGGGGGGCTTGCGGGGGTCTCCGCTACAGGACCGGAACGTCAGTCGCATTCGAGcgatggagagggagaagaaggaGACTTTAGAGAAGGTCACCGGCGAGTACGATACTCTCCAGAAGGAGCATGAAGAGCTGAAGAAGAAGCTTGAGGGATCCAAGGCCAGAAACAAAGTGCTGAGCAACGAGGTGAAGACACTGAAGGGCCAGATCTCCACCTTACTGGACAAGGGCAAGCATGATGACGAGCTGGTGGACGCTTTACTGAAGCAGCAAAAGCAGCTACAGGAGGTTCTGGGCCGCATGAGCCAGCAGGAGCAGAAGAGCAAGGAGAGCTCGGGCCAGCAGATGAGCACCGAGGCCCAGCGGCACAGCTCCCTCGTCCAGCAGCTCCGACAGATGGTTTCCGAGAGGGAAGCCAAGGTCAAGCAGCTCGAGGAAGAAATCACACAACTGTCTCTCAAGAGGCATGCTGAAGAGGAGGGCAGCTCTAAAGGTATGGACAGACCGCTGTCTGGGGGGCAGACGGAGAGGGGCGGTACCTGTAGCTCCAGACCTTCGACAGCAGTGGGCGATACCACTGAGAAGATGCCATCTGTGTCGTCTTGCAGAACCATTTCCAAACTGGGGCACACACTGGTCGAATCGGCAGCTACTCCTTCAATTAGCAGCTCTGCAGTGGGTGTGAACGCCGCCGATGTGAAGTCCCTGCAGGCCAAGTGCACCGAATACAGGGCACTCTACCAGGTGGCAGAGGTGGAGAGAGATAAACTGATGGAACTGGTGAAGGTGTTGCAGAAAAGAGAGCAAGAGACCAAGGACAGAGGTCTGGCCGCGGAGCAGGCGCTGCAGGCGGAGCGCAGGCGAGCCGTGGTCCTGGAGCAGCGCCTGGAGAAGGCCAAGCTGGTGTCGAGCCTCCTGGAGCAGCGACTGGAGAAGGCCAAGCTGGACCAGAGCCCAGGCCAGAGCTCCTACCGAGCAACACACAGGGGCAAAGCAGGCATATCTGCCAGCAGTACGGGGTTCGCTGTGAATCAGATCGACTCCTCGGACATCTCTCCTAGAGGCTCCCTGGGCGTAACTTTTGAGACTCAGGTCGAAGAACTAAACACAAAACTCGCAATCCAGCAGGATGAGAACGAGGCGTTGAAGGTGGCGCTCCAGAGCAGCCTGCAGGGCAAGGAGGAGGACCTGCGGCAGTACAATGACATGGTGGGCAAGGTGAAGCAGGTCTTCCTTCAGGCTCTGTGGAAGCACCGACAGGAGAAGGGCAACAGCAGCTAGCGGCTCCAGGGAACTGGATCTCCTCAGCAATGTGAGGTTCCTTGACCTCGTGAAGGGCTTGTCTTTCTGACTTGGAAGTCTGAGAACATTTGTACTTTGTGTGAAGAGGTGGCGCTTATTTCATTCCTGAACAGACCTGCTCAGATTTCCCTCTCGTGGCGTCTGGTCCTTGTTTAAGTGTTAAGTGCATCTCTCTccatgtgttgttttgtgttctttaaaCGCATTGAGAATCTTGAGCAATATAAAGTGATTGCCGTTTTAGAAGTGTATTTTTGTCACATATTACTCATGATAAAGAACAGGATAAGAGCGATCGTTGTTTAGCGTGTGCTGGTAATGTAGTGAATTGTGTTGTACTAGCTTTACACATGCTCAGTATCGCACAATACCAATAACGATGAAAGACATGGCATCATACAAAGAAAAGATTGGAAAACCAAGACTTGAATTTTCATCATTTGAAAAACTTTTTGTAAGTAATGATATATGGCATCTTTATATTTTCCAtacagcaaaatatatatttaaaacatatccCATATCAAAGGGCACAATTTTGGTATATACAAATACAGGCATCATACATTTCTACCAATCATTAATGGAAATTTAACTTTAAGCCCTGGACTTCCTTATGTATGTATCAGTTGCCAAGttataaaatctgtttttctaaaTTGCAGCCAAGAAGATTGCATCAGACgcctttatttttgttcttcccACATCTTCCCGCTCCGTTTATGAACACACAGACTTTCTGTCTGGGCTGAAATACCACACGATTTTACTGAGCATCCTTTGAGGCGCAGACATTCCCAATTTGGACTGAATTAAATCACCACAAGACAAACACATTCCAGTTATTCCAATTTATCACATAGCCTCCATGTGCTTTGAGAGGAATAAAGTGTTTTGCAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39899 lncRNA downstream 404817 6264691 ~ 6265136 (-) True G31882
TU39895 lncRNA downstream 407115 6262637 ~ 6262838 (-) True G31878
TU39892 lncRNA downstream 505416 6163989 ~ 6164537 (-) True G31875
TU39861 lncRNA downstream 683157 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 742360 5923714 ~ 5927593 (-) True G31833
TU39965 lncRNA upstream 2297 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 9175 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 10532 6688860 ~ 6689516 (-) True G31932
TU39969 lncRNA upstream 11508 6689836 ~ 6692303 (-) True G31933
TU40037 lncRNA upstream 546261 7224589 ~ 7224997 (-) True G31993
AMCG00019166 mRNA downstream 37109 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019161 mRNA downstream 218342 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019157 mRNA downstream 478742 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019158 mRNA downstream 508451 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 524489 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019165 mRNA upstream 2372 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019170 mRNA upstream 99076 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019174 mRNA upstream 191186 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019175 mRNA upstream 265721 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019176 mRNA upstream 329456 7007784 ~ 7014100 (-) True AMCG00019176
TU39603 other downstream 1733957 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4491303 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4586682 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4586682 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4959410 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6983788 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7813563 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7813563 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8273514 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9014154 15692482 ~ 15721452 (-) True G33381

Expression Profile