RNA id: AMCG00019166


Basic Information

Item Value
RNA id AMCG00019166
length 798
RNA type mRNA
GC content 0.56
exon number 5
gene id AMCG00019166
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6615650 ~ 6632844 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCCCTGAGGGACTGGCCCTGGGCGGTGACCGGCGGAGTGGAAAAGCATTGCTCTGTGGGAGGAAGCCACAACACGGCGACAGATGCAAGGGTGCTGTCAGCAGCTTGCTGGCTATCAATCACCAGGGCCATTGTGGTCCTCCCTTCACGGAGAGcgagagtgggagagggagagggagaggggagaagaTGGCGTGGGATCTGCTCCCGTGCTCTCTGGCATCGGTGCTGGGCTCCGTGTTTGTGCTGCTTTCCCTGCACCTGGCGCTGGTGCTGCCACAGATCATAGACCCCGAGGAGGCTGGGGGCTATGAGTTTAAAGTCATCCCTGAGGTACCGATGTCCAGCTGTGATACAGAACACTACATGTCCCTGCTGGACATCACGCCAGACTGTCCTCAAATGTCCCACtttgGTACCTCGAGCCCCCCCAGGACGAAGCCGGCCCCTGTGACGTCGGAGACAGTTGTTTTCTGGGGGCTCCGGTTATGGCAAGTCATAGGAGTTTTTTCAATGTTCGTTCTGGCAGTTATAATAACCCTGTGCTGCATCTTCAAGTGCCGAATCCCCAGAACGAAAAAGGAGATTGAGGCACGGCACGTGCAGAGACTGGCAGCGAAGAAATACGCCAATACGCTAGAAAACGTTCCTCCTCTGAATGAACTCACAGAAATACCAGGAGCCGCCGCAGACCCTACTTCCCTCCACACTGTTTCTGGTCAGGTCCAAGCTAGGAGTGTCAACCCTCTTCCTGTTGTGAAAGAGGAAGACGAGATGGCGCTCCATGGGAATTAA

Function

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0007605 sensory perception of sound biological_process
GO:0048884 neuromast development biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23907 TMIE; transmembrane inner ear expressed protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39899 lncRNA downstream 350514 6264691 ~ 6265136 (-) True G31882
TU39895 lncRNA downstream 352812 6262637 ~ 6262838 (-) True G31878
TU39892 lncRNA downstream 451113 6163989 ~ 6164537 (-) True G31875
TU39861 lncRNA downstream 628854 5964264 ~ 5986796 (-) True G31845
TU39839 lncRNA downstream 688057 5923714 ~ 5927593 (-) True G31833
TU39965 lncRNA upstream 47781 6680625 ~ 6684051 (-) False AMCG00019165
TU39967 lncRNA upstream 54659 6687503 ~ 6687816 (-) True G31931
TU39968 lncRNA upstream 56016 6688860 ~ 6689516 (-) True G31932
TU39969 lncRNA upstream 56992 6689836 ~ 6692303 (-) True G31933
TU40037 lncRNA upstream 591745 7224589 ~ 7224997 (-) True G31993
AMCG00019161 mRNA downstream 164039 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019157 mRNA downstream 424439 6165183 ~ 6191211 (-) True AMCG00019157
AMCG00019158 mRNA downstream 454148 6157865 ~ 6161502 (-) True AMCG00019158
AMCG00019155 mRNA downstream 470186 6126193 ~ 6145464 (-) True AMCG00019155
AMCG00019153 mRNA downstream 653503 5947889 ~ 5962147 (-) True AMCG00019153
AMCG00019164 mRNA upstream 37109 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019165 mRNA upstream 47856 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019170 mRNA upstream 144560 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019174 mRNA upstream 236670 6869514 ~ 6897553 (-) True AMCG00019174
AMCG00019175 mRNA upstream 311205 6944049 ~ 6963885 (-) True AMCG00019175
TU39603 other downstream 1679654 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4437000 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4532379 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4532379 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 4905107 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 7029272 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7859047 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7859047 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8318998 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 9059638 15692482 ~ 15721452 (-) True G33381

Expression Profile