RNA id: AMCG00019169



Basic Information


Item Value
RNA id AMCG00019169
length 1170
RNA type mRNA
GC content 0.46
exon number 1
gene id AMCG00019169
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6689915 ~ 6691084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atGGCTGACCTGAGTGCCCTTAACAACGATTCTCAAGATGAACATGATGACATGTATGACTACAGCTACTACAACGAGTACTTGGAAAATGGAAACCACCTTCACAATTATGGAGTGTGTGAGAAGGGACACGTGAAGGCATTCGCGAGAGTTTTCCTGCCCGTACTGTACACCTCTGTGTTCGTGCTAGGAATGGTCGGGAATGGGCTTCTGGCTGGCATTTTGATCAGATATATCAAGCTCAAAAGAATGGTGGATATATACTTGCTGAACTTGGCCGTCTCAGACCTTTTGTTTGTGGTAACCCTGCCATTCTGGGCAGTCTATGCACATTCTGAGTGGATTTTTGGAAGCACTACATGCAAAGCTGTCACCCTAATTTACACCATGAATTTGTACAGCAGTATCTTCTTCATAACCTGCATCAGCTTGGACAGGTATTTGGAGTTCGTCTGGTCTTTCCACACCATTAACCTCAGGAAACTGCCAGTGAGTTGTGCGATCTGTGCAGCGGTGTGGACTGTCTCCGCCTTGGCCTCTGCTCCGGATGTCATCTTCACCGAGCTGCAAGAATTTAGAGATCATAAACTGTGTTTGCACAATTTCGGAGGGGAGCACATGTCCTGGTGGAAAATCTTCATGAAGTTCGAGCTGAATATTGTTGgttttttcattccatttctGGCCATGCTGTTTTTCTACTCCCGTATTTCTTGTGTCATAACCAGAGCAAAGCTCCACAGGGGAACCAAAAGTCTAAAGTTAGCTATTGCTttggtggttttttttttcgtgtTGTGGTTCCCTTACAACCTGGTGGTGTTCCTGCACTCTTTGCAAGACCTTCATGTGATTTCACACTGTACCACCAGCCAGCACCTAGACTTTGCCATTCAAGTGACGGAGAGCCTTGCTTTTGTTCACGCTTGCCTCAACCCAATCCTGTATGCATTTGTAAACAAGAAGTTTCAGCACCACCTCATGAGCATGCTGAAAATGATCTGCAGAAGAGGCAGAGAATATTCTCTGGAGCACGAAGGTCATTCCTCAACTCAAAACACTGTCACTGACTTGAGTGGGGGTGGAAATGCTCTagtctgtgtatcagtgttGCCAATTCTACCCATAGACCCCGAAATTGGGCTTGTCCAACAGAACAGTGGACTATAA

Function


GO: NA

KEGG:

id description
K04187 ACKR2, CCBP2; atypical chemokine receptor 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU39948 lncRNA upstream 11527 6678165 ~ 6678388 (+) True G31915
TU39947 lncRNA upstream 16738 6672898 ~ 6673177 (+) True G31914
TU39915 lncRNA upstream 253208 6435691 ~ 6436707 (+) False G31894
TU39914 lncRNA upstream 253926 6434199 ~ 6435989 (+) True G31894
TU39912 lncRNA upstream 272066 6417481 ~ 6417849 (+) True G31893
TU39966 lncRNA downstream 638 6691722 ~ 6692280 (+) True G31930
TU39986 lncRNA downstream 128681 6819765 ~ 6820035 (+) True G31947
TU40036 lncRNA downstream 533548 7224632 ~ 7224997 (+) True G31992
TU40059 lncRNA downstream 740596 7431680 ~ 7431944 (+) True G32010
TU40100 lncRNA downstream 929420 7620504 ~ 7620812 (+) True G32048
AMCG00019163 mRNA upstream 21770 6606972 ~ 6668145 (+) True AMCG00019163
AMCG00019162 mRNA upstream 123422 6485078 ~ 6566493 (+) True AMCG00019162
AMCG00019160 mRNA upstream 309570 6355260 ~ 6380345 (+) True AMCG00019160
AMCG00019159 mRNA upstream 377795 6311748 ~ 6312120 (+) True AMCG00019159
AMCG00019156 mRNA upstream 709394 5969442 ~ 5980521 (+) True AMCG00019156
AMCG00019167 mRNA downstream 13273 6704357 ~ 6705892 (+) True AMCG00019167
AMCG00019168 mRNA downstream 78159 6769243 ~ 6770217 (+) True AMCG00019168
AMCG00019171 mRNA downstream 132151 6823235 ~ 6832585 (+) True AMCG00019171
AMCG00019172 mRNA downstream 206734 6897818 ~ 6907983 (+) True AMCG00019172
AMCG00019173 mRNA downstream 217049 6908133 ~ 6917381 (+) True AMCG00019173
TU39314 other upstream 3479232 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 3479232 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 3593489 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 4542352 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 729417 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 1654371 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 1654371 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 2570290 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 2638395 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile