RNA id: AMCG00019172


Basic Information

Item Value
RNA id AMCG00019172
length 2326
RNA type mRNA
GC content 0.54
exon number 16
gene id AMCG00019172
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6897818 ~ 6907983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTAACATAAGTATCCTGGTAAATAACGTTATCAAAAAGACATTTATGGCTCTTGAAAAGGAATtgtgggtaaaaaaataaaataaagatggcTGCGTCCATATACTAATGGATGTTCGGACCGGTTTGCTTTCACTTAATTGAACTTGGATAAACAACAAgttcaatatgttttattttttaattaagagtaACTTCAGATTCATGGCATTCGGTCCTCTAGGGCCCCTCTATTCTCGCCTCACTAAAACAAGAGATTTGTGGAACTACAGCAGTAGGTTTGCCCAGAGCTGGACACAACTGCCCAATGCAGGGGTTTCGAAAGGATGCCCAAACAACTATTTCCTCCGCGTGTGGAGTCAGACCCAGAGGGCACTGAGACGGACGGCTCGGCAGAAACCTGAAGCTCCCAGTTTGAAACGGACACTGGGATTTATAGTGTGTCCAGCAGGCCTTGTCATTTCCGCCCGTCTGTACAACAGTGTGGCACACTGTCAGACTGACCTCAATAACAACAAACCACTGCAGTTTCAAGGGAGACATCACGACACAGAACCTGAGTTTGACTGGAAGGTTTTCTGGACATTTCTTAGGCCCCAGCTCTTGGCTCTGCTGGGAGCCGTTGTTCTTGCCTTCTGTGCTGCCATTCTGAATATTCAGATTCCTCTGATGCTGGGAGACCTGGTGAATGTGGTGGCCCGATACATGAGAGAAAATGCCGGGAACTATCTTAATGAAATGAGAGGCCCTGCGATAAAACTGCTGGGTCTCTATGGATTGCAGGGGCTGTTGACCTTCGGGTACATCACTCTGCTGTCCAGAGTTGGGGAGAGAGTTGCTGCAGACATGAGAAAGACTCTCTTTATGTCCATACTCCGGCAAGACATAGCCTTCTTTGATGCCAACAAGACTGGGCAGCTGGTCAATCGCTTGACCTCGGACATACAGGAGTTTAAGTCTTCGTTCAAGATGGTCATCTCTCAGGGACTGCGCAGCATCACTCAGACTGTGGGCTGCTTCGTGTCGCTGTACCTCATCTCTCCCAAACTTACGGGGGCCACCCTGGTGCTGATGCCCTGCCTGGTGGGGGCCGGAGCTCTGATCGGCTCGTTCCTGCGCAGGCTGTCCAGGAGGGCTCAGGAGCAGGTGGCCAAGGCTACGGGGGTGGCGGACGAGGCACTGGGGAACGTGCGGACGGTCCGAGCCTTTGCCATGGAGGACCGAGaggcagaGCACTACTCTGCCGAGGTTGACAAGTCATGTGACGTGAACGAAGCTCTCGGAGTGGGAATAGCCGTGTTCCAGGGGCTGTCAAACGTCGTCCTGAACTGCATTGTTCTGGGCACCATTTTCGCAGGCGGGTCCTTAATGGCCAGTGAGGAGATGTCCCCTGGTGATCTCATGTCTTTCCTGGTTGCCTCTCAGACGGTGCAGAGGTCCATGGCCAGCATCTCTATCCTCTTTGGACAGTTCGTGCGCGGTCTGAGTGCTGGAGCCAGAGTGTTCGAGTACCTGGTCCTGGAGCCCACCATTCCCCTGCAGGGGGGCGCCAGGATCCCCTACCATTCCCTGATTGGTAGAGTCGACTTTCGGGACATCACCTTCAGGcaagtcctgctctctcctccagTCTGGGTCATTGTGCAAGTTAATAGGGCATCCTATCCAACCCGACCTGGGAATGAGGTCCTGAAGAACTTCAACCTGGTCCTCCCCCCCTGCAAGACGGTGGCCATCGTAGGAGAGTCTGGAGGAGGTAAATCCACGGTGGCGGCTCTGCTGGAGCGCTTCTATGACCCCAGCAGGGGAGTGGTCACGCTGGATGGACAGGACATTCGAACCCTAGACCCGTCCTGGCTCCGAGGCCAGGTCATTGGATTCATCAACCAGGAGCCGGTTCTGTTTGGATCCTCAATCATGGAGAACATCCGCTTTGGTAAACCCGACGCCACTGATACAGAGGTTATCACTGCAGCCAAGCAAGCGAATGCTCACGGCTTCATCTCCGGCTTCCCTGAGGCCTACGACACCGTGGTCGGTGAGCGCGGGGTGACGCTGTCCGGGGGTCAGAAGCAGCGGATCGCTATTGCCCGAGCCCTGATCAAGAACCCCAGCATCCTGATCCTGGATGAGGCCACCAGCGCCCTGGACGCCGAGTCGGAGCGCGTGGTGCAGGATGCGCTGGACCGGGCCACCTCGGGCCGCACCGTGCTCATCATCGCCCACCGGCTCAGCACTGTGCAGGGTGCTGACATCATCTGCGTCCTGAGCAACGGCAAGGTCATGGAGCcctgtgatgatgatgatgatgatgatgacagaTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05655 ABCB8; ATP-binding cassette, subfamily B (MDR/TAP), member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39986 lncRNA upstream 77783 6819765 ~ 6820035 (+) True G31947
TU39966 lncRNA upstream 205538 6691722 ~ 6692280 (+) True G31930
TU39948 lncRNA upstream 219430 6678165 ~ 6678388 (+) True G31915
TU39947 lncRNA upstream 224641 6672898 ~ 6673177 (+) True G31914
TU39915 lncRNA upstream 461111 6435691 ~ 6436707 (+) False G31894
TU40036 lncRNA downstream 316649 7224632 ~ 7224997 (+) True G31992
TU40059 lncRNA downstream 523697 7431680 ~ 7431944 (+) True G32010
TU40100 lncRNA downstream 712521 7620504 ~ 7620812 (+) True G32048
TU40173 lncRNA downstream 1263662 8171645 ~ 8171861 (+) True G32113
TU40198 lncRNA downstream 1437472 8345455 ~ 8347293 (+) False G32130
AMCG00019171 mRNA upstream 65233 6823235 ~ 6832585 (+) True AMCG00019171
AMCG00019168 mRNA upstream 127601 6769243 ~ 6770217 (+) True AMCG00019168
AMCG00019167 mRNA upstream 191926 6704357 ~ 6705892 (+) True AMCG00019167
AMCG00019169 mRNA upstream 206734 6689915 ~ 6691084 (+) True AMCG00019169
AMCG00019163 mRNA upstream 229673 6606972 ~ 6668145 (+) True AMCG00019163
AMCG00019173 mRNA downstream 150 6908133 ~ 6917381 (+) True AMCG00019173
AMCG00019178 mRNA downstream 451620 7359603 ~ 7379672 (+) True AMCG00019178
AMCG00019180 mRNA downstream 475456 7383439 ~ 7394256 (+) True AMCG00019180
AMCG00019181 mRNA downstream 492272 7400255 ~ 7403144 (+) True AMCG00019181
AMCG00019187 mRNA downstream 788870 7696853 ~ 7701770 (+) True AMCG00019187
TU39314 other upstream 3687135 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 3687135 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 3801392 3094478 ~ 3096426 (+) False AMCG00019096
TU38962 other upstream 4750255 2141830 ~ 2147563 (+) False G31110
TU40051 other downstream 512518 7420501 ~ 7421083 (+) True G32005
TU40197 other downstream 1437472 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 1437472 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 2353391 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 2421496 9329479 ~ 9348819 (+) True AMCG00019215

Expression Profile