RNA id: AMCG00019174


Basic Information

Item Value
RNA id AMCG00019174
length 3475
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00019174
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 6869514 ~ 6897553 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGGAGTGACGTCAGACGGTGTTTTGTTGACATTCGTGTTGCTGCAGAAAGTGACAAACACGAACCGCGATCAAATCGGTGCACCGAGACAAGTAACCCCGCCGGGGACTGGAGGATTATACACATCCGTCTTCACCGGGGGACACTCATAACCAAACATCAGACGCATGGAATAACTAAGACAGGCATAATTACACCTTTCGCAACGTCCAAGGAGAGGGGCAATATCGGAGAGCCGTCTGGGTGGGAGGGCTGGAGAGAATGTGAAGCACAATGGCTAATTTTGAAGCATATCAAGAGTACCAGCGGATAGAGGATTTTGAGGAAGACTCTCCTCCCGGGGAGGAAGACCTGCTGGTGCACGTCCCCGAAGGCTTGAAAGATTCATGGCATCATATCAAGAACTTGGACAACTTCTTCACAAGAATCTATCACTTCCACCAGAAGAATGGCTTTGCGTGCATGATGTTGTCCGAGTTCTTCGAACTGGTACAGTTCCTGTTCGTGGTCACCTTCACTACGTTCCTCTTCAACTGTGTGGAGTACGATATCCTGTTTGCCAACAAGGCTGTGAATCATACGACGCACAACCTGGGGCCGCTGGACCGGAGCAAAGTCACGCTGCCCGATGCCATCCTGCCCAGCCAGCAGTGCACTGAGAAAATTCAAGAAAATGGTTGGATCATCTTCCTTCTGATCATGGCAGCTATCTTCTGGCTCTACCGGCTAATCAAAGTGTTCTGCAACATCCTCAGCTACTGGGAGATCCGCCAGTTTTATATCAAAGCGCTGAAGATAACGATGgaCGAGCTGTGCAACCACACCTGGCAGGAGGTGCAGGACCGGCTGATCAGCCTGCAGCGCGAGCAGCAGATGTGCATCCACAAGAAGGAGCTGACCGAGCTGGACATCTACCACCGCATCCTGCGCTTCAAGAACTACATGGTGGCCATGGTCAACAAGTCCCTGCTGCCCGTGCAGCTACACCTGCCCCTGCTGGGTGACACAGCCTTCCTCACACAGGGGCTCAAGTACAACTACGAGCTCATCTTCTTCTGGGGCCCTGGCTCGCTCTTCCAGAACAAGTGGAACCTGCACCCCAAGTACAAGCGGGCCGGCAACCGCCTGGAGCTGGCCCAGCAGCTGAGCCGCGTCATCCTGCTCACCGGCCTGGCCAACCTGCTGCTGTGCCCCTTCATCCTGGTGTGGCAGGTGCTGTACGCCTTCTTCAGCTACACTGAGGTGATCAAGCGCGAGCCGGGCAGCCTGGGAGCGCGCCGCTGGTCCCTGTACGGCCGCCTGTACCTGCGCCACTTCAACGAGCTGGACCACGAGCTGCACAGCCGTCTGGGCCGCGGCTACAAACCCGTGTCCAAGTACATGAACTCCTTCACCTCGCCGCTGCTCGCCGTCTTCGCCAGGAACGTGGCCTTCTTCTCGGGCTCGGTGCTGGCGGTGCTGATCGCGCTGACAGTGTACGACGAGGACGTGCTCACTGTGCAGCACATCCTCACCGCCATTACCCTGCTGGGCGTGGTCATCACCGTCACCAGGTCCTTCATCCCTGACGAGCACATGGTCTGGTGCCCGGAGcagctgctacagtgtgtgcTGGCCCACATCCACTACATGCCCGACCACTGGAAGGGCAACGCCAACAAGAGTGAGACGCGGGACGAGATGGCCCAGCTCTTTCAGTATAAAgcgGGCACCGATGCTGACCTGCCTGTGCGCGCTGTGCTCTCACCCACCCAGGTCTTCATCCTGGAAGAGCTGCTCAGCCCCATCGTCACGCCCTTCATCCTGATCTTCTTCCTGCGCCACAAGTCGCTGGAGATCATCGATTTCTTCCGCAACTTCACGGTGGAGGTTGTGGGCGTCGGGGACATCTGCTCCTTTGCCCAGATGGATGTCCGCAGGCATGGCAACCCTCAGTGGCTGTCTGAGGGCCAGACGGAGGCGTCCGTGTACCAGCAGGCAGAGAATGGCAAGACAGAGCTGTCCCTGATGCACTTCACCATCAAGAACCCACGCTGGCAGCCGCCGCAGGAGAGCTCGGTCTTCATCAGCCACCTCAAGGAGAAGGTGCAGCAGGACGCCGCCAGCGCCCCCCCAGCCCAGCAGATCCTGTCTGAAGCGCCGATCTGCACCTCGCTGCTGTCCAACGAGTCCGGCACTGCGCCCGAGAACCTCCTGGCCAGCGTGTTGGCCCACCCCGTGCTGACGGCCTCGGGTCTGCCGGGCCGAGACCGCCGCTTCCTGCCCCCCAGCACCGCCGCCTCCGCTGCCGCCAGCGTCTTGGCCTCCCTGTCCGCCTCTCAGCTGCCCAGCCGCGCCCGCTCCCACACCCTGCTGCCCTCCACCTACCCTGACAGCCCCATGTACCGCAGCGACCGTACAGTCGTGGAGGACAGCATGTACGCCAGTGACTCCCGGATCCGCAGCGCCAGCCACTCCGCGTACCACCTGGAGTTCGCCTCGGCCGAAATGAGCCTCCATGCCATCTACATGCACGAGGCGAGTTCTCAGTCACACTCCAGCCAGCCCGAGAGCCTCTCTGGACGCTCTCCCGTGCACCTGGGGGGCTGGacggaggaggaagaggatgagGAGCCGGAGCTGGGCATCGTGGGTGACGCGCCTCCACGGCCAGAAGTGGGGATCAGGAGCTAAAGTGCCTTAAAAACAATGACGGAGGTATGATTTGATCTTTCAGAGAACTGTGTGGCCTTAGATCATCTAACTCAAACCTCATCAGTGTTCGGTGTGCGTCGCTATGAAGCTGGTTGTGGGTCTTCCACAACCCAGTGTCTTCCAgttgcacaaaaaacaaaacagtggagAACGGAGCGTGGCGGCGAGGAATGCGTCTTCCAGGACAtcgatttgtttgtttggctttttttttttttgtatctgttagCGAAACACAGACTTTATAACGAACTGCTGCTTGTGTGTGCGACAGGAGGGATGGCAGGCGGAGGTGTGAAACTCGCAGGGAGGGAAGGTTTGTGCTCGAGGACGAGAAACAGGTAGAAAACTCGCTGCTGAATGTGAAACGAAGAGTAAgttaacattttacttttttaatattaaagacacacaaaactaaaaaacccAGCTCTGTTTACACGCAGGTCTGTAGGGGTGACAAAGTGGCGAGATGGCTTTGCTGGAGGTGTCTGGTTCCAGTCCTATGAGGGTTTTGATGAGTTCCCGTTGCAAGCTGCTGTACATTAGGCTTGAGGTGGTTTTGCTGCTCAAAGCTCAAAGGCTCCTCCTGGCATAGAGACTGCAGCCACGGGAGAGATCTTACAGgcaaggtttttttgttttggacagGTTGTACTTtagtattttgtgtaattaatcCAGTACTGTTATTACATTTTGCGTAGATGTTTTTTATGACTCGTTTTCTTAATGATCGCAGACTGTcaaaggtctttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K17907 ATG9; autophagy-related protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39969 lncRNA downstream 177211 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 179998 6688860 ~ 6689516 (-) True G31932
TU39967 lncRNA downstream 181698 6687503 ~ 6687816 (-) True G31931
TU39965 lncRNA downstream 185463 6680625 ~ 6684051 (-) False AMCG00019165
TU39899 lncRNA downstream 604378 6264691 ~ 6265136 (-) True G31882
TU40037 lncRNA upstream 327036 7224589 ~ 7224997 (-) True G31993
TU40042 lncRNA upstream 393298 7290851 ~ 7291130 (-) True G31997
TU40089 lncRNA upstream 518532 7416085 ~ 7419853 (-) True G32037
TU40109 lncRNA upstream 776202 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 805289 7702842 ~ 7703076 (-) True G32061
AMCG00019170 mRNA downstream 88370 6777404 ~ 6781144 (-) True AMCG00019170
AMCG00019165 mRNA downstream 185213 6680700 ~ 6684301 (-) True AMCG00019165
AMCG00019164 mRNA downstream 191186 6669953 ~ 6678328 (-) True AMCG00019164
AMCG00019166 mRNA downstream 236670 6615650 ~ 6632844 (-) True AMCG00019166
AMCG00019161 mRNA downstream 417903 6434512 ~ 6451611 (-) True AMCG00019161
AMCG00019175 mRNA upstream 46496 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019176 mRNA upstream 110231 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019177 mRNA upstream 281073 7178626 ~ 7179255 (-) True AMCG00019177
AMCG00019179 mRNA upstream 440294 7337847 ~ 7338238 (-) True AMCG00019179
AMCG00019183 mRNA upstream 523190 7420743 ~ 7422322 (-) True AMCG00019183
TU39603 other downstream 1933518 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 4690864 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 4786243 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 4786243 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5158971 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6764563 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7594338 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7594338 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 8054289 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8794929 15692482 ~ 15721452 (-) True G33381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00045761 True 7028 mRNA 0.42 15 NC_007135.7 33802594 ~ 33839355 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_02829108_02838763.mRNA True 3559 mRNA 0.47 13 CI01000024 2828646 ~ 2839196 (-)