Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00019181 |
| length | 642 |
| RNA type | mRNA |
| GC content | 0.65 |
| exon number | 3 |
| gene id | AMCG00019181 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030124.1 |
| NCBI id | CM030124.1 |
| chromosome length | 51038645 |
| location | 7400255 ~ 7403144 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0021555 | midbrain-hindbrain boundary morphogenesis | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0060827 | regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09321 | GBX; homeobox protein GBX |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU40036 | lncRNA | upstream | 175258 | 7224632 ~ 7224997 (+) | True | G31992 |
| TU39986 | lncRNA | upstream | 580220 | 6819765 ~ 6820035 (+) | True | G31947 |
| TU39966 | lncRNA | upstream | 707975 | 6691722 ~ 6692280 (+) | True | G31930 |
| TU39948 | lncRNA | upstream | 721867 | 6678165 ~ 6678388 (+) | True | G31915 |
| TU39947 | lncRNA | upstream | 727078 | 6672898 ~ 6673177 (+) | True | G31914 |
| TU40059 | lncRNA | downstream | 28536 | 7431680 ~ 7431944 (+) | True | G32010 |
| TU40100 | lncRNA | downstream | 217360 | 7620504 ~ 7620812 (+) | True | G32048 |
| TU40173 | lncRNA | downstream | 768501 | 8171645 ~ 8171861 (+) | True | G32113 |
| TU40198 | lncRNA | downstream | 942311 | 8345455 ~ 8347293 (+) | False | G32130 |
| TU40344 | lncRNA | downstream | 1492095 | 8895239 ~ 8933746 (+) | True | G32235 |
| AMCG00019180 | mRNA | upstream | 5999 | 7383439 ~ 7394256 (+) | True | AMCG00019180 |
| AMCG00019178 | mRNA | upstream | 20583 | 7359603 ~ 7379672 (+) | True | AMCG00019178 |
| AMCG00019173 | mRNA | upstream | 482874 | 6908133 ~ 6917381 (+) | True | AMCG00019173 |
| AMCG00019172 | mRNA | upstream | 492272 | 6897818 ~ 6907983 (+) | True | AMCG00019172 |
| AMCG00019171 | mRNA | upstream | 567670 | 6823235 ~ 6832585 (+) | True | AMCG00019171 |
| AMCG00019187 | mRNA | downstream | 293709 | 7696853 ~ 7701770 (+) | True | AMCG00019187 |
| AMCG00019190 | mRNA | downstream | 308511 | 7711655 ~ 7712858 (+) | True | AMCG00019190 |
| AMCG00019189 | mRNA | downstream | 318696 | 7721840 ~ 7723326 (+) | True | AMCG00019189 |
| AMCG00019188 | mRNA | downstream | 335380 | 7738524 ~ 7760540 (+) | True | AMCG00019188 |
| AMCG00019191 | mRNA | downstream | 546354 | 7949498 ~ 7964176 (+) | True | AMCG00019191 |
| TU39314 | other | upstream | 4189572 | 3203787 ~ 3210683 (+) | False | AMCG00019100 |
| TU39316 | other | upstream | 4189572 | 3203787 ~ 3210683 (+) | False | AMCG00019100 |
| TU39281 | other | upstream | 4303829 | 3094478 ~ 3096426 (+) | False | AMCG00019096 |
| TU38962 | other | upstream | 5252692 | 2141830 ~ 2147563 (+) | False | G31110 |
| TU40051 | other | downstream | 17357 | 7420501 ~ 7421083 (+) | True | G32005 |
| TU40197 | other | downstream | 942311 | 8345455 ~ 8384592 (+) | False | G32130 |
| TU40199 | other | downstream | 942311 | 8345455 ~ 8384592 (+) | True | G32130 |
| TU40426 | other | downstream | 1858230 | 9261374 ~ 9539211 (+) | True | G32286 |
| TU40432 | other | downstream | 1926335 | 9329479 ~ 9348819 (+) | True | AMCG00019215 |
