RNA id: AMCG00019182


Basic Information

Item Value
RNA id AMCG00019182
length 744
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00019182
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7431674 ~ 7433638 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTTTCGAAGTGCCGGTGTCCCTCTCACTAACCCCTCTCTCCCGTCTGTTTGCAGAGCAAGAGGAGTCGTTCGAGTTCGTCATCGTGTCTCTGACAGGACAGATGTGGCACTTCGAGGCCTCCACGTACGACGAGAGGGAGCTGTGGGTGCAGGCCATCGAGAGCCAGATATTTGCCAGTTTGCAGTCCTGTGAGAGCAGCAAAAACAAGGTGAGTCTCGGCTGTGGTGTTGGCTGCACCGGTTCCGCACTGACACCAGAGTACAGAGGCACGGGGCCCGGCTCCTGCCATCCCGCCTTAGACGAGTCTCGGGGGCAGCCAGCCCTGCTCCGCACCGCCTTCACCCCCGGTGTTAGTGCCGGGAAACGAGCCGGCACAGAGAGAAGCTTCGTTGCCAATCTCTCCCCAGCTGCCACCTGCGAGACAGAGGCAGACAGTCAGAGTGACGCGGTGGCCATCCAGTCGATCCGCAACGTGCGAGGAAACAGCTTCTGTGTGGACTGTGAGGCGCCCAACCCCGACTGGGCCAGCCTGAACCTGGGGGCACTGATCTGCATCGAGTGCTCGGGCATCCACAGGAACCTGGGCACCCACCTGTCCCGCGTGCGCTCGCTGGACCTGGACGACTGGCCTGTGGAGCTCAGCATGGTGATGACGGCCATCGGCAACGCCATGGCCAACAGCGTGTGGGAGGGCGCGGTGGAGGGCTACAGCAAGCCGGGCACGGACAGCACCAGGTGA

Function

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40089 lncRNA downstream 11821 7416085 ~ 7419853 (-) True G32037
TU40042 lncRNA downstream 140544 7290851 ~ 7291130 (-) True G31997
TU40037 lncRNA downstream 206677 7224589 ~ 7224997 (-) True G31993
TU39969 lncRNA downstream 739371 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 742158 6688860 ~ 6689516 (-) True G31932
TU40109 lncRNA upstream 240117 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 269204 7702842 ~ 7703076 (-) True G32061
TU40129 lncRNA upstream 321615 7755253 ~ 7758227 (-) True G32076
TU40156 lncRNA upstream 537555 7971193 ~ 7972225 (-) True G32096
TU40245 lncRNA upstream 904398 8338036 ~ 8375404 (-) True G32144
AMCG00019183 mRNA downstream 9352 7420743 ~ 7422322 (-) True AMCG00019183
AMCG00019179 mRNA downstream 93436 7337847 ~ 7338238 (-) True AMCG00019179
AMCG00019177 mRNA downstream 252419 7178626 ~ 7179255 (-) True AMCG00019177
AMCG00019176 mRNA downstream 417574 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019175 mRNA downstream 467789 6944049 ~ 6963885 (-) True AMCG00019175
AMCG00019185 mRNA upstream 12248 7445886 ~ 7470263 (-) True AMCG00019185
AMCG00019184 mRNA upstream 46455 7480093 ~ 7499543 (-) True AMCG00019184
AMCG00019186 mRNA upstream 166231 7599869 ~ 7607375 (-) True AMCG00019186
AMCG00019204 mRNA upstream 1193376 8627014 ~ 8636548 (-) True AMCG00019204
AMCG00019203 mRNA upstream 1202912 8636550 ~ 8662947 (-) True AMCG00019203
TU39603 other downstream 2495678 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 5253024 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 5348403 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 5348403 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5721131 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6228478 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7058253 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7058253 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 7518204 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8258844 15692482 ~ 15721452 (-) True G33381

Expression Profile