RNA id: AMCG00019185


Basic Information

Item Value
RNA id AMCG00019185
length 843
RNA type mRNA
GC content 0.65
exon number 5
gene id AMCG00019185
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7445886 ~ 7470263 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTATCGGCACACAGCCGGGCTCCCAGGTCACGAGGGGGTTTGACTGCCACGTGTATCTGCAGGACTACATGCAGAACGTCCATGGGAAGGAGATCGACTTGCTGAGGACCACGGTGAAGGTGCCAGGCAAGAGGCCTCCGCGGGCCGTGGCCACCATCGCCCCCACGGCCAGCCCCAAGACCAACGGGCTCACCAAGGACCGCAGCAACCTGCAGCTGGCCACGGGCGCCCCCGGGGCCCCGCACTCCAACAGCAGTGGCTCCCTGCAGTCCGAGCGCTCGGTCAGCGGGATCAACCTGGTGGCCTTCAGCTCCAAGCCGGACGGGATGCACCAGCGCTCGTTCTCAGTGTCCAGCGCTGACCAGTGGAGCGAGGCCGTCATCAACACTGGTGCCGcaAACGGGACCACCGACTCCCTCAGCTCCAGTCCCATCGTGTCCAGTACGACCAGCCCGAAACTGGAGCCACCGCCGTCGCCGCACGCCAACCGCAAGAAACACCGGCGGAAAAAGAGCACCGGCGCCACCAAGCCCGACGGGCCAGCCGCTGGCAACGAAGTTGTCTTTATCCTGCTGATGGGATTCGGTCCCGTAATCGATATGCCCATAAACCAGTCTTTGTTCGGCCCCCTTGTGAAAGCGGGGCCGATTGAGACGGCAGGTCCTGACACTTCGGCAGCGCTGTGTCACTTCCCGCTTCCTCTGGgcggaggggagagggagagtgagagagagagaggggtccgCGCTCGCACCCCGTTCCCACCTCGGTGGGGCTGGCTTTGTGTGCCGTCCGCGGCGCGGAGTTCAGCTGCTTCCCGCTCCCATTATCCGCGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40089 lncRNA downstream 26033 7416085 ~ 7419853 (-) True G32037
TU40042 lncRNA downstream 154756 7290851 ~ 7291130 (-) True G31997
TU40037 lncRNA downstream 220889 7224589 ~ 7224997 (-) True G31993
TU39969 lncRNA downstream 753583 6689836 ~ 6692303 (-) True G31933
TU39968 lncRNA downstream 756370 6688860 ~ 6689516 (-) True G31932
TU40109 lncRNA upstream 203492 7673755 ~ 7687169 (-) True G32057
TU40113 lncRNA upstream 232579 7702842 ~ 7703076 (-) True G32061
TU40129 lncRNA upstream 284990 7755253 ~ 7758227 (-) True G32076
TU40156 lncRNA upstream 500930 7971193 ~ 7972225 (-) True G32096
TU40245 lncRNA upstream 867773 8338036 ~ 8375404 (-) True G32144
AMCG00019182 mRNA downstream 12248 7431674 ~ 7433638 (-) True AMCG00019182
AMCG00019183 mRNA downstream 23564 7420743 ~ 7422322 (-) True AMCG00019183
AMCG00019179 mRNA downstream 107648 7337847 ~ 7338238 (-) True AMCG00019179
AMCG00019177 mRNA downstream 266631 7178626 ~ 7179255 (-) True AMCG00019177
AMCG00019176 mRNA downstream 431786 7007784 ~ 7014100 (-) True AMCG00019176
AMCG00019184 mRNA upstream 9830 7480093 ~ 7499543 (-) True AMCG00019184
AMCG00019186 mRNA upstream 129606 7599869 ~ 7607375 (-) True AMCG00019186
AMCG00019204 mRNA upstream 1156751 8627014 ~ 8636548 (-) True AMCG00019204
AMCG00019203 mRNA upstream 1166287 8636550 ~ 8662947 (-) True AMCG00019203
AMCG00019209 mRNA upstream 1376888 8847151 ~ 8901878 (-) True AMCG00019209
TU39603 other downstream 2509890 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 5267236 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 5362615 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 5362615 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 5735343 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 6191853 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 7021628 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 7021628 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 7481579 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 8222219 15692482 ~ 15721452 (-) True G33381

Expression Profile