RNA id: AMCG00019190



Basic Information


Item Value
RNA id AMCG00019190
length 780
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00019190
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7711655 ~ 7712858 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTGACAGGAGTAGTTCATGTGTTTTTGGCAAGTCCTCTCTGTTCTGCCACCGAGTTATGAGCCTGTATTCTTATTGCAGGGATTTAAAGCTGCAGAATCTCCTGCTGGATGGACACGGCTATGTCAAGCTCAGTGACTTTGGCCTGTGCAAGGAAGGGATGGGACTGAATGACCGCACTAGCACCATGTGTGGGACGCCCCAGTTTGTGGCGCCAGAGCTACTGACGGATACGTCCTACACCCGGGCCCTAGATTGGTGGGCCGTGGGCATCCTCCTCTACCAGATGCTGGTTGGCAAGGTCCCATTCAATGGAGCCAATTTCCATGAGCTCGCACACAGGATTGTGCACAATGACGTGAGATACCCACAGTTCCTGTCCACAGACGCAGTGTCCGTCATCACAGGGGTGTGTGCTAGTGCTGTTCTTCCGTGTGACTTCAGTTTGTCCCCCGCTGTCCTGCTGACCAGCCACGATGAAGGTGTGTCACTGGAGAATCACTGGCCTCTCCTTGTTGTTTTGAATCATCCGCAGCTTCTGGAGAAGAACCCCGAGAGGCGCCTGGGGGCCGGGGAGGGAGGCGTGGAGCAGCTGAAGAGCCATTCCTTCTTTGAGGCGAGGAGGGGGATGGCTCACTTTGTGGCCCCCTGCAAGAACCCTGAAGTCCTGGGCCAATCAGCGGACCCCGTCCTCACGCTGCCTCTCgagcacagagccctgactgaGGAAGTGCAGAACCTCTTCACCGACTTTGATTATGTGGGAGATTGGTGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40100 lncRNA upstream 90843 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 279711 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 486658 7224632 ~ 7224997 (+) True G31992
TU39986 lncRNA upstream 891620 6819765 ~ 6820035 (+) True G31947
TU39966 lncRNA upstream 1019375 6691722 ~ 6692280 (+) True G31930
TU40173 lncRNA downstream 458787 8171645 ~ 8171861 (+) True G32113
TU40198 lncRNA downstream 632597 8345455 ~ 8347293 (+) False G32130
TU40344 lncRNA downstream 1182381 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 1450785 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 1548516 9261374 ~ 9471843 (+) False G32286
AMCG00019187 mRNA upstream 9885 7696853 ~ 7701770 (+) True AMCG00019187
AMCG00019181 mRNA upstream 308511 7400255 ~ 7403144 (+) True AMCG00019181
AMCG00019180 mRNA upstream 317399 7383439 ~ 7394256 (+) True AMCG00019180
AMCG00019178 mRNA upstream 331983 7359603 ~ 7379672 (+) True AMCG00019178
AMCG00019173 mRNA upstream 794274 6908133 ~ 6917381 (+) True AMCG00019173
AMCG00019189 mRNA downstream 8982 7721840 ~ 7723326 (+) True AMCG00019189
AMCG00019188 mRNA downstream 25666 7738524 ~ 7760540 (+) True AMCG00019188
AMCG00019191 mRNA downstream 236640 7949498 ~ 7964176 (+) True AMCG00019191
AMCG00019192 mRNA downstream 270339 7983197 ~ 7983668 (+) True AMCG00019192
AMCG00019193 mRNA downstream 301674 8014532 ~ 8028727 (+) True AMCG00019193
TU40051 other upstream 290572 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 4500972 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 4500972 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 4615229 3094478 ~ 3096426 (+) False AMCG00019096
TU38960 other upstream 5564092 2143921 ~ 2147563 (+) True G31110
TU40197 other downstream 632597 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 632597 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 1548516 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 1616621 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 1657040 9369898 ~ 9628662 (+) True G32293

Expression Profile