RNA id: AMCG00019193



Basic Information


Item Value
RNA id AMCG00019193
length 661
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00019193
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8014532 ~ 8028727 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCTCTGAGCCCTGATGCTGACCCCGACAACACCTTCCAGAGAGAGGGATTTGGACGTCAGAGCATGTCGGAGAAACGGACCAAGCAATTTGGAGATGCCAGTCAGCTGGAGTTCATTAAAACACGGAAATCAAAAAGCATGGATTTAGTAGCTGACGAGATTAACCTCAGTCCTCGGTCAGAGAAGAACACAGGTTCCCCAACTAGAGATGTTGGCCCTTCGTTAGGCCTGAAAAAGTCGAGCTCGCTGGAAAGCCTGCAGACTGCGGTGGCCGAGGTGACGCTGAATGGAGACATCCCTTTCCACCGGCCACGCCCGCGCATCATCAGGGGCCGGGGCTGCAACGAGAGCTTCCGCGCGGCCATCGATAAATCCTATGACAAGCCCGCTGCTGAGGAGGACGACGAGGGCATGGAGACTTTGGAAGAGGACACGGAGGAGAGCTCTCGGTCAGGCAGGGAGTCCGTATCCACCGCCAGCGACCTAGCCTTACTGAGCGGCGGCTCGGGAACCATCGAGAGGCAGGTCAACGGCGGCCGAGCCaaagaggagaagaagaaagacaagGGTGGAAAGGACAAGAAGAAGCAAGAGCGTGataaagagaaggagaagaataAAGCCAAGAAAGGGATGCTGAAGGGACTTGGGGACATGTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40100 lncRNA upstream 393720 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 582588 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 789535 7224632 ~ 7224997 (+) True G31992
TU39986 lncRNA upstream 1194497 6819765 ~ 6820035 (+) True G31947
TU39966 lncRNA upstream 1322252 6691722 ~ 6692280 (+) True G31930
TU40173 lncRNA downstream 142918 8171645 ~ 8171861 (+) True G32113
TU40198 lncRNA downstream 316728 8345455 ~ 8347293 (+) False G32130
TU40344 lncRNA downstream 866512 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 1134916 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 1232647 9261374 ~ 9471843 (+) False G32286
AMCG00019192 mRNA upstream 30864 7983197 ~ 7983668 (+) True AMCG00019192
AMCG00019191 mRNA upstream 50356 7949498 ~ 7964176 (+) True AMCG00019191
AMCG00019188 mRNA upstream 253992 7738524 ~ 7760540 (+) True AMCG00019188
AMCG00019189 mRNA upstream 291206 7721840 ~ 7723326 (+) True AMCG00019189
AMCG00019190 mRNA upstream 301674 7711655 ~ 7712858 (+) True AMCG00019190
AMCG00019194 mRNA downstream 260347 8289074 ~ 8298766 (+) True AMCG00019194
AMCG00019197 mRNA downstream 280266 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019198 mRNA downstream 308494 8337221 ~ 8346452 (+) True AMCG00019198
AMCG00019199 mRNA downstream 345073 8373800 ~ 8401893 (+) True AMCG00019199
AMCG00019196 mRNA downstream 394419 8423146 ~ 8423334 (+) True AMCG00019196
TU40051 other upstream 593449 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 4803849 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 4803849 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 4918106 3094478 ~ 3096426 (+) False AMCG00019096
TU38960 other upstream 5866969 2143921 ~ 2147563 (+) True G31110
TU40197 other downstream 316728 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 316728 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 1232647 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 1300752 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 1341171 9369898 ~ 9628662 (+) True G32293

Expression Profile