RNA id: AMCG00019194


Basic Information

Item Value
RNA id AMCG00019194
length 729
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00019194
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8289074 ~ 8298766 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGACTACGTGGAAGTGCGGGATGGGGGCGATGAAAACGCCCAGCTGGTTGGGAAGCACTGTGGGAAGATCGCGCCGTCTCCGGTGGTGTCTACTGGCAATCAGCTCTACATTAAGTTCGTGTCGGATTACGAAACGCATGGAGCTGGATTCTCCATCCGTTATGAAGTCTTCAAAACAGGACCGGAGTGCTCCAGGAACTTCACAGCAACAAGCGGAATTATCAAATCTCCACAATTCCCGGACAAGTACCCCAACAACCTGGAATGCACTTACATGATCTTTGCCCCCAAAATGGCAGAGATTATAATCGAGTTTGAGAACTTCGAGCTGGAGCCTGACACCACCCCTCCCACAGGGGTGTTTTGCCACTACGATCGCCTAGAAATCTGGGATGGGTTTCCTGGAGtGGGTCCACATATAGGACGATACTGTGGACAGAACACCCCTGGGCGCATCCAAGCCTATACTGGTATCCTGTCCATGACCCTGAATACTGACAACGCAATAGCTAAAGAGGGATTCTCAGCCAACTTCACCGTCATTGAGAAAACTGTACCAGAAGATTTCGACTGCATGGAGCCACTGGGAATGGAATCGGAAGAGATCCCTTCAGACCACATTATTTCGTCTTCCCAGTATAACACAAACTGGTCACCAGAGAGATCCCGACTCAATTACATCGAAAACGGTTGGACTCCATCAGAAGACTCCAGCAAAGAGTGGATA

Function

GO:

id name namespace
GO:0035767 endothelial cell chemotaxis biological_process
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007508 larval heart development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0048538 thymus development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0001570 vasculogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007155 cell adhesion biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40173 lncRNA upstream 117213 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 668262 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 857130 7431680 ~ 7431944 (+) True G32010
TU40036 lncRNA upstream 1064077 7224632 ~ 7224997 (+) True G31992
TU39986 lncRNA upstream 1469039 6819765 ~ 6820035 (+) True G31947
TU40198 lncRNA downstream 46689 8345455 ~ 8347293 (+) False G32130
TU40344 lncRNA downstream 596473 8895239 ~ 8933746 (+) True G32235
TU40402 lncRNA downstream 864877 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 962608 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 1009871 9308637 ~ 9324063 (+) True G32287
AMCG00019193 mRNA upstream 260347 8014532 ~ 8028727 (+) True AMCG00019193
AMCG00019192 mRNA upstream 305406 7983197 ~ 7983668 (+) True AMCG00019192
AMCG00019191 mRNA upstream 324898 7949498 ~ 7964176 (+) True AMCG00019191
AMCG00019188 mRNA upstream 528534 7738524 ~ 7760540 (+) True AMCG00019188
AMCG00019189 mRNA upstream 565748 7721840 ~ 7723326 (+) True AMCG00019189
AMCG00019197 mRNA downstream 10227 8308993 ~ 8322828 (+) True AMCG00019197
AMCG00019198 mRNA downstream 38455 8337221 ~ 8346452 (+) True AMCG00019198
AMCG00019199 mRNA downstream 75034 8373800 ~ 8401893 (+) True AMCG00019199
AMCG00019196 mRNA downstream 124380 8423146 ~ 8423334 (+) True AMCG00019196
AMCG00019195 mRNA downstream 149114 8447880 ~ 8461935 (+) True AMCG00019195
TU40051 other upstream 867991 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5078391 3203787 ~ 3210683 (+) False AMCG00019100
TU39316 other upstream 5078391 3203787 ~ 3210683 (+) False AMCG00019100
TU39281 other upstream 5192648 3094478 ~ 3096426 (+) False AMCG00019096
TU38960 other upstream 6141511 2143921 ~ 2147563 (+) True G31110
TU40197 other downstream 46689 8345455 ~ 8384592 (+) False G32130
TU40199 other downstream 46689 8345455 ~ 8384592 (+) True G32130
TU40426 other downstream 962608 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 1030713 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 1071132 9369898 ~ 9628662 (+) True G32293

Expression Profile