RNA id: AMCG00019206


Basic Information

Item Value
RNA id AMCG00019206
length 2222
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00019206
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9046918 ~ 9055856 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGCCGTGACGCAGGGATGCGCCGATATTAGCTGCGGGGCGGAGAGGCGCCCCAGCAATGCGGGCTGGGATGCTACTGTACAAAACTAGCTGAAAGAGCTGTGAAGGACAGGCAGCACCATGGAGtacatgaatgaaaatgtggGGATACAACTTCTGCTGATGCGCATGAAACTGGAGAGCTGCATTGGGGCATATGACATTGAAGAAGTAGATTTATCTGAAGGAAGCCTCACCCAGGACGAAATGGACGAAAATGAAGAAATTACAGACTCTTTAGTGCTGGATGAAAGTAAGCACGGTCTTCTGCACGACAGGGTCGGTTATGGATCTGTGAATGAGCTGCTCTCTTTTGCTAATGTGGTGTCAGACGATCCACAAGTTTTGCACAAACACCAGTTGCAAGAAATTGGCGTTCTGTTAAACAAGAAGGATATGCTGGTACGAGATGGACGTTATCGCATCGGCTTGGACGTGTTTCTGTTCCCATGGAAGTACACCTACAGCAACCCTGGCTCGGGTCATGTTCCTAAAGGGTCTTTTGGCAAAGTACACCTGGCTCAGGACACAGAAACCAGAAAACGAATGGCATGTAAACTTATTCATGTCGAGCACTTCAAACCGGCTGACGTGGAAATCCAGGCGCGCTTCCGTCATGAGAACATCGCGGAGCTGTACGGGGCTTTGCTGTGGGACCAGACCATTTACCTGTTCATGGAGGCTGGAGAGGGGGGCTCTGTGCTCGAGAAGTTGGAGAGCTGTGGCCCAATGAGAGAATTTGAAATCATCTGGGTCACCAAGCAGGTGCTGAAAGCTCTGGAGTACCTTCATTCCCAGAATGTCATACACCACGACATCAAACCCAGCAACATTGTCTTGATGTCAACCAAAGCTGTTCTGGTGGATTTTGGATTGGCTGTGCAAATGACAGAAGATGTGTACAAACCAAGAGATCTTCGAGGGACAGAAATGTACATGAGCCCGGAAGTGGTCCTTTGCAGAGGTCACACGACGAAGGCAGACATTTATAGCCTGGGCACCACTGTCATTCACATGCAGACCGGCAGCCCACCCTGGGTGAAGAGATACCCGCGGTCTGCCTATCCCTCCTACTTGTACATAATCCACAAGCAGGCCCCGCCTCTGGAGGACATTGCGGAGGACTGCAGTCCGGCCATGAGGAGGTTCCTGGTGGGCGCTCTGGAGAGGAACCCTGCCCAGCGACACTCTGCAGCGGAGCTCCTGAGAGACGAGGCTATAAACCCGCCCCGGGAGGACCAGCCGCGCTGCTGGAGCCTGGACTCCGCTATGTGTGAGGGGACGCACCCCATGCTGCGCCAGCACAGCCAGCTGCCCGACACCACCCAGGATTCATCTTTGTACAGCAATGAAGATTCTGTCCCCCAAAAGAGACAGGGATCGTTGTACATCGACCTGGGGGCACTGGCAGGTTATTACAACATAGTAAGGGGACCCCCAGCATCCGAATATGGCTAACAGCTCACCACTGCCTCACGCTAGTTCAAGGCCGTGTCTGTGGATTACACAGGAAGTGCAAATTAATTGGAAGATGGGACTCCAGGTGATTTACTGATGAAATAATGTGATCGTCCTCATTAGCAGGGTATTACTCCTCAGTGTACAAACTCTGTTATTTGCCCACAGTGAACGAGCTGGACTTGGGATTGGGAGTAATGTTATTATGGAATTGAAATTGAGATAGCAGTATGTACTCAAAGAAGTGTTAAAGCCTGTAAACAAGGACAAACCAAGAATAATAAACAGGTGAGACTGAAACCATAGTCAGGGGATAACCTGTTTTTAGTTGTAATAGTAATGACGCTCACGAATATCTGATGATGTATGAtctatgaatacatacatattccaaaaatatgtttctaatAGAAATGATTCACATGATTGGCGGTGTATGAGAAGGCTTTAGTATTTACCTAACAAAATGTCTTACCAGTCTACTTATTTACTAAATACAGGTTTTAGCTTGTATTTGTTTCTACAGATTCCTATGGAAACAGTTATTGCTAGTAATTGCTATGCAGGTTAACCAATATCTATGTTTATTGTGTGAACTATTTGTGTAATGTCTATTGGTTTTGTAACTTTTAATTGTACATCCAGTGAGATGAAATGAAATGTGCCCTTAACAATTGTTCACATATGTgatttgaataaatgtatttcacatttacattatacaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04415 MAP3K8, COT; mitogen-activated protein kinase kinase kinase 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40344 lncRNA upstream 113172 8895239 ~ 8933746 (+) True G32235
TU40198 lncRNA upstream 699625 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 875057 8171645 ~ 8171861 (+) True G32113
TU40100 lncRNA upstream 1426106 7620504 ~ 7620812 (+) True G32048
TU40059 lncRNA upstream 1614974 7431680 ~ 7431944 (+) True G32010
TU40402 lncRNA downstream 107787 9163643 ~ 9222509 (+) True G32268
TU40428 lncRNA downstream 205518 9261374 ~ 9471843 (+) False G32286
TU40431 lncRNA downstream 252781 9308637 ~ 9324063 (+) True G32287
TU40434 lncRNA downstream 293993 9349849 ~ 9352655 (+) True G32290
TU40474 lncRNA downstream 637413 9693269 ~ 9750270 (+) True G32321
AMCG00019205 mRNA upstream 261979 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019202 mRNA upstream 440798 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 505613 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019201 mRNA upstream 525064 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019195 mRNA upstream 584983 8447880 ~ 8461935 (+) True AMCG00019195
AMCG00019215 mRNA downstream 280789 9336645 ~ 9348641 (+) False AMCG00019215
AMCG00019214 mRNA downstream 301242 9357098 ~ 9376745 (+) True AMCG00019214
AMCG00019212 mRNA downstream 351445 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019217 mRNA downstream 570554 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019218 mRNA downstream 598470 9654326 ~ 9663886 (+) True AMCG00019218
TU40197 other upstream 662326 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 662326 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1625835 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 5836235 3203787 ~ 3210683 (+) False AMCG00019100
TU40426 other downstream 205518 9261374 ~ 9539211 (+) True G32286
TU40432 other downstream 273623 9329479 ~ 9348819 (+) True AMCG00019215
TU40438 other downstream 314042 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1348783 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5383397 14439253 ~ 14486706 (+) True G33159

Expression Profile