RNA id: AMCG00019207


Basic Information

Item Value
RNA id AMCG00019207
length 9579
RNA type mRNA
GC content 0.40
exon number 2
gene id AMCG00019207
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 8968886 ~ 8984696 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGTGATGGCTTCTGCTGCACAGTTTTGCTCCGGCTCGAAGTGCTGTGCCTAGGATATAACACTCGCAATAATAGGAATAACAATACAACATGTACAGCGTGGAAGATCTCCTGATTTCTCATGGATACAAATTGCCCAAAAACGCTCCTTCGTCCTACGAGAACCGCTTTGCCGATTGCCACCATGAAATCATAGAGAACAGGTCTGGTCATGGAACAGTGAACGGGTATGAAACAGACACAGGGGCCTACGTTTACAGCAGGCAGGCACCGGCAAAGGGCTACTTCAGTGACAATGAATGCAGGGAAAGCAACCAAAGGAGAAAAGCTGGCAGCGGTAACCAAGGTGACACACAGCCCTTGGGTGATTTTCTTACTAGAGACACTGGGTTCTGTGATGGATCGAGAGGGATGTATCCTGTTCAACAGAGGAACGAGAGAGACGTGTCCTACTGGAGGAGACGGGGGCAGGATTTCAGCGTCTTACTGGATTACGcagacagcagagagccaaggggAAGTAGCTTTGCAAAACCAGAGGGGATGAGAAAAGGGCACGAGATGCCGACAAAAGACAGACAACATGAAGGAGCGTGGTGGGAAGAAAGTACGTGCTTGAAAGAGAGAGGCGTGATGCAGGAGAAATGGAGGATAGCGGGTGATCGGAAGTGGCAAAGCCTCGGTACGGAGGAGTGGAAACCTGCCGTTGGTTTAGGACGGCAGCTGTCAGATGGAGACGGGGACAACTGGGCGCACAATCAGCGCTGCCTGAAACCCGGAGAAGGTGTGTCAGTTCACCAAAAAGCAAAAGGGAAGTCACAGTCTCTTCCAAGAGTTCTGTCACCAGAGAGTCTGCAGTATGTTGAAATGCCTTTATCCAGTCAAGACATGTACAGTAGCCAGAGGATGAATGGCAAAATATCTCAAGGACCTTACAATAAATATCATGAGGAGACATCTGGCAAAGAACTGTGTCCTGAAATCGTCAGGCCAGGTGGTCACCCTGCACTTTTACCAAAGCCTAGGTTTAGCCGGCCGCTGAAGCCTCCATCGTATGAAGCTCACCAGCAGACAAGGGGCAGTTCGGAAATGATAGCTGGAGTTCAAGAGCCTaaatcaaaagacaaaatatCGTATTTTGCCAAGAGTGGGGAAACAAGACAGGACATTTTTGCATATGAACCTGCAGGGTCAAATTTGGAGCCTCCAGTTTACATACCTCCTCCATCTTACAAAAAACCCCAGCTTCAAAAAGTAAGTGAACGGGGCTTTAATGAAGTGACTAAATATAAGTTCAAGAGGGAGGTTCAGCAGGTGCCAGAAAGTACGGATACAGGGAAGTGGTTCTCCAGACAGACAGGAAGCTCTTGGGTTGAATACCAGAAGGGCAGAGGTGTACCCTGCAGGAAACAGATGTATCCGGGATACATTGGTGACCATCTGGGATGTGTTCAGTACATACCCTTTGATGATCCACGTGTGAAACACATCCAAGGAGATCCGTGCGGAAAATCCCTGACTGACTCTgacaaactaaaaaacatcaGTAAAGAGATGCCCAGTGCTACAGCATTAGAACAATCTACACATGACAGTGCCTTTTCCCCCCCACAGGGCCTATCCTTTGATATGGATGCAAGCAAAAGATCTCTTCATGAACATGACAATGGCAGTAGATGGTATAGTGGTTTGCACAAAGGGAGTGATAACTCCATAGCATCTGACCAAAGCTGTATTAAGTATCAGAAAGACCAATCTCACATGGCTTATCAATTCAGAACATCTAGGCAAAACTCAAAGCTTGACCAAGGTCTCTCTGAAACTGTAACCCAAGTGAAGAAATTTGAACCTGGTACTGAAGCGGAGAGCAAAAGAAactcaaaaagaaaactgaacgAGACCATCTTCTGCTTAGTTTCCGTTCCAGTTCACTTGCAGCCAAACGGTGAGAGTTCAGATCAGAATAATAACGAGAAGATTCCTAGCGCTGCAGAAGGTTCCATTGATAAAAATGTTGGAAATCTGCAACACCAAAGTCTCCTAAGCACATCCTCTACAGATTTAGAGTTACAAGCTCTTACTGGTGGCATGATGAACAACAAAGGAGTGAAGAAAATGCACCCGAGGAAAGACCAAGATGAGCTGAGGCCTCTCcaaccaaataaacacaaagaacTACAGTACTCTGGGTCTTGGCCTGGAGATCAGTACAGAGATCAGGAGACACAAACCAGCTTTCCAGAGCCTTCCAAAGGTGCCCCTCAGGGTTTTCCAAACAACCAAGCACAAAGCCAGAGCCACCCTGCCCCTGACAACACGGCAGAAGTGAATCTAGGTGCTGATTGCAATAACAGATATGGGTACCCCATGAAGGGGCAGAAGTACCTTAACCCTTCCAGCAACAGTGCTTTTTCAAGGACAACCACGTTTTCTAATCAAGTAAATAAGAGCACAGCTCAGCAAATTCAACCCTCAGGAAACCTAGAGGAGAAGAATCATATTTCAACAAGGACGTGTGAAAGTAAATCGTCAGCCAGTAATGGTAAGGAAGTCTTTGGTCAGTTTCTATTGAAGCCCGTCAGCCGGCGCCCATGGGATGCAATTGAAGAACTGGAATCCTTCAACAAGGAGCTTCAGGAGCAGTTTGGCAAACAGCCCAGTGTTGACAACTCTGTGGACGACATAGACACGGATTACAGAGATATTCTGGACTTCAACATGGCTGGCCCTGGAGCTGAAAATGCTAAGACACACATTTCTGACCAAATCCAGGGAAGGCCAAGTTTGGCTGAAGCACCCCactgtcaaacaaacaaacttaaaacTGCTTTTGAAAACTGGACTGCTGCAGTTGATCTTGAATACAGAGACATTAGTGCTTTTTCACGCCCTCCACCGAAGACAGTAAGTTTCGCCAGGCCAGCAAAAGAAGAGGTGCCCATGCTGTCACAGAAAACAGTGTGTGACCGCAGAATCTTCAAGCAGGACATGTCTCGTCCGAAAGAGCCACGTGGGGGTGTGAGTTCTGCTTTTCAATCCTCTTCTGCCGAAGCACTGGGTGTCCCTAGGCAGATGATGCAAGATGCCTCGACCCATACAAACCCTCCCGACTATGAGGACATATGTTATGCTTTGCAGCTATCACGGGAATCCATGGGGATCAACAGAGCAGCTAAACACGATGACCATATTCCAACAGAGCCGAAGTCTGTAGACTTTAAATCTGTGTCTCAGACTTCTGTTCAAACTGTTGGCTTCAGTAGACAAAAGCAGGAGGGCCTCTGCTTCAAAACAGAGCCTGACAGGAAGATAAAGAAAGAGAACCTAGTTCCCAAGGGCAGTGCGGAGAACAGTCCCAATATTGTTAACTTGAAAGGTCCAAACAACAAGTTCCATTGCAGCGGAGGTCTTCATAACTCTGTTAATGACAAGTCATCGGAAGACAGAGATACGAACGGAGGATTGTTCATGACCGATGACGATGCTGAAACGTGTAGTTGGATGAAACAGCCTTCCTTAACAGAACTGCATTTGGAAACCCTGCAGGTGAATGAGAAGGCGAGAGGCCTACAGGGTGAAGACCTGAACAACCTTTTTGAAATAAAGAGTGCAGATGGGATTCCCGAAAATGAATCCTTTGAGCAGAGGGCGGCTAGGATATTAGGAATAGATGTACCAGCTGAATCTCTAGGTGTGGCGGAGCACAACGGAAGCAAACACGTGGCGGAACAGAAAGGAGCTACAGAAATCCAACCTTTGATGCAGGGGAATGCATTTAGCGGGGAAGCACTGGAACATAGTGCCAATGGTGATGTGTTGCACATGAGAAGACAGTATCAAGAACAGAGTGCAAAGCCCAGGCTGGTCAGGAGGCAAGACAGGGAAAAAGAGCTAACAGAGACAAGGAGAGAGACAAGCACGGGCAATCTGCTGGAAAACAATTGTGTGGAAAAGAAGAATGATCTGAGTGTGCAGGGGCTGCTACCTGGGAACCTGCTGCCTGTTAGTGCTGAAGAAAAGATGGGCCAGCCCCTTGGTTCTGATAAAAAGAGCAGAAGCACCTCGAGAATGATCGAAGCCCTGCAGGACAAGCTGGCTTCCTCCCCCAGCCGCACAGTCATGGAGCGCATTGTCCGGATGAAAGAGGTGGACTCTGTGTCGCGCATGAGACGCCTCAGCATTAAGAGCTCGGACTCAGGGGACGAGGCCGAGGCAGAAAGGATGACTAGACCATGGCAGGATGCCGAGGAGATCCATACCACTCGGCAGGAGACACGCAGTGGAGCTGTTACCAAAAGAGAAATAACTCTGGCCCAAGATCTCCGGGTTTCCTCAAAGGGGATGGCACTGCAAGACGTAGAAGTCTTGTCCTTTTCAGGTAAGCATAGAGATACATATTTTGAGAAAGGTTGTCCTCTGTGTCTGGACATCGTGTTCACAGGAAGCAGCATTGTGAAAGGTTGGCCACAGGCGATCAATTAGCACGTCAGTCTTTTCAGGCCTGCAAGAGAGCCAGCCAGTACAATGGTTCTCTCTCACTGTTCCTAcagatgatttttttaatgttatttccgAATCTTAACCAATGTCAtggcagtttatttattcaaatgttaatcgaagttttaaaaacaaaataatttaagctGGTTACTGTTATATCAAATGATGATATTAACAGACAGATAAATAGCTACCTAAGACCAAGTGAATGCATATCATATGgattaaatatgttatttaagccaaaagccttttaaaatgcataccaTATCAGCATTGTTGGGATTCCTTGGACTGCCTGGTATAATAATCCCTCCAGCTCCCTGTCAACACTTTACACTGACTGCATTAAAACTCTgagcaaacaaaatgcaaatgtacagGTAAGATACCGTATGTGTAAGAGGCTATGGCTCCTAACTACGTCCTTAAAGGTATCCCAAACAGCTTCTGGTTGTGGAAGAAATTGAAGAGTGTAAAACTTTAATCTCGTGGCGTAACACACACTTCCTGCATGCTTTTAGTGTAGTTCACGTGGACGGCCCCTGATgaattatcaatttaaaaattatactgTGAAATGTAAGTATACTGTGGATTGTTTCTTCTGTTTATGGCCAGTCTATCTGCCTTTGCATTTGTAATCAAATGTCAGTAGACATTTACATGCCTTTGTTGTGTAGCGAGGTCTTTTGAGGTTACTGAACTATTTTTACTGTTTGTATAAAGCCACTTGGatgtaaagtaaacattttgcagtgattacaaaaatgttaataataataaataagcataATAGACTGTGACAACAGGCTAAAGGATGATGTTCAGGAGCTTTaacattcagtgtttttaaagatttcctTAAAGTTCTTTCAacagaatttttaaaaatatgattagtTGAGTCTTCAAgacaattatgtttttgctAATCGTGaaattgctttctttgtttacttttgtatCCTTTTAATAGCTCTTTCCAGTGAAGTTGTGTCTCTCACAGTGTAGTGGGGCTGATTTCCATTGAGCCcctttctgttgctgtgtttaAGTATTAAAGAGTTACGAGCATGATGGCTGATGGACAggaatatttaaacatttccaaTTCGCTGCTGTAAACCAAGGTGCTTGGTGCTGGCTTTCTTCACGGAGCAAAGCAGTGAGATAGTTCTACagttgatgtgtttatttttattttttataattagtttGTTCTTTAATATTGATTATACAGTTATACTTCAGTTGGGATAATCGTTAGATCTTTTATTTCCTCTACAggatattctttatttttccacacCAAACACTAACAGTGGGGAAGAGGAATacgttaataataataaatgactcTCACTGAAtctatatattttcctgttaaaataatgttgtttgaAACTCTAAATTGAATCTGGTATATTGTGCTACAAATGTGGGATGTCAACTCTCTGCCACAAGAGGGGGCGCCTGTCTACTCTATATGATTATTGGCAAAGTGAAGAGAAAATCAGCTGTGTAAATAGGAGGAAGTTCAAACCTgcttatgttttcttttcagttttttttttattaatcaagtAACAAATCTCACAGGGCTTAATACCAAGTTAATATTCACTTAGGTCATAGGACAAATTAGggaaatttgattaaaaatccTGGAAAGGAAATGAGGATTAATATAACAAACCCCAATCTTTCAGACTCACCACAAAAGCCAAGACCAGAGTTCACACTGAGAATGAGAGACCCCTCCTTAGCAATACAATATGTATGAAACAAACGACCAAATCATTGTTTAGACCCTGATTCAATAGGATCCTTCAAAACATACTTGATGAGGTCCAAGAGTGAAGAGAAATTGTTGTTAAAGCATGGAAAACAGCCTGCTTGAAGTCAGATTTgttgaaaagaataaaaactgCCGTGGTGTTTCTAACCGTTTAAAAAATTTAACATCACATGTGAATAACTTCTGACCTTACATTAAAAAacgttttctttcatttaacacttattttatgtttttttgtttctttgttttgtttttgctttttgcagATTCTTACGACCCCAGCAGAGTTGAAAGAGTTTAAAGAAATGGCAACTGAAGCTCTGAGCATCATCTACATCTGAGATCCAGTTAAAACACTGTGACCTGGCTGCCCACTATAATGCCTTCATTTCATCCTAATCTAATGAAAATTGCCTTCTTCGACACAAGCATTGTTTACACTGTCATCTCATTTTGTGATGAAAGTGCTGTTTCACTGCCAATGGGAAATGGCTCTCAGGGGGCCTGTTTCCTTGCTGTgagaaatcatttattttgtttagttttttcggtttccattttcaaaactgcttttctgtTGACCAACATTATGCAATTCCGTAATgtaaacaaactattttaacCTATTTTATAACAATGGCAAAGCCATGACTCACGTGTTTGTCTTTAGATATGGATGTTGCTGCAATCTGAATGTAAGTGCTGTTGTTTTCAAAGTGAAATAGACACAGAATATAAAGGGTCATATGAACCGTTGTATTACAATCAGTATTAACGTCACCAAATGTAAAGTTTGAAAGATGCTTGGACACTCATTAAAGTCCACTTGATTAGGACTTTGGGCCAAAGCACGGATTATTTTCACAGGATTCAGTAACCACTGAACGCGACTTAAAGCATAATGCTGTGCTTTATGTCAGTAAAGCTGTACTGAACTTCTCTATTCGAATTCTGTACTTTTGGAATTCATGTTTATAGGTGGAAAATTAGCCGACAGCATCGATTTAAAAACACTGTGGTTCATTAAATAGTATTAGACAGAGCAATATTTGTTGTATAGTGCTAATTCTGTTGCTTTCTGCAACTCATAGCCAGCATCAGGATTGACCTTGAAAACGTCCTTGCTTAAAAACTGCGTGACTGACAAAGCGCACGTCTGAGAGCGTGTGcttgtatgtgtttttgcatTACGAGCAACATCATCCACATATATTACACTTTCCTtcaccaaatatttatttttctgttatttcatcAAAATGTTATTCAGTCTACatgatgtaaaaaataaaatatattttaactatatttcaagagatattttgtatttaaccatataattttatttccccAATTAAGCCTTGAATTATCTTATATACCTATAATACTATGGTAATAtgaacataacatttaaaaacatatatattgtttctcaAAGGATGTGTGATAAAATAATCCAGTTGATCTGAATACACCTTTATTCTAATATACTGAACCTATAGGTTGAACAAATACCCAAGGCAGTGATTAACAGTTTTAGATGTACCCTCTCCACATTGAAGAATAAGAAACCCTTACAAATTCTACTCTTTTCACAGTTGTGTTTCATAATACATTGTTACTTTTTCTGCTTATTTCTGAAAgttcaaacaaatatatgtgaCTTTCTtggacaaaatatttatttcattgtaaaaCAGCATACAATGGCAAGTATTGTAGGATACAAGCAGTTTTATCttatagaataataataatgtctccCAAGGTTTCATTAACGTTCAGTTTTGTCAAGGAGAACAATATACTTACAATCTTACAATATCAAAACTCATAACAATTTGATTATTATGCAGCATTGTgctatgttatatattttacatttatttattttgtagagtATGTGGATAATTGTATAAGCATTCCACTCTAAAATTCAGTCAGCCTGGCAATaatactacaatatatattacaatggcagaaatagtattttgttttagagaTTTATTAATCCTTATTTCTGTTTAAGATGCATATGTTGCTTTTCAAATCTAAAGTTTTCTGATATAAGCTTTCTGGTAATATACAGTGTGCAGAAAATACGATGATAATTAAGAACAGCATTACAGTTCCTTGTATTGAAGataatacagtttttattaggTTGTTCTTTGTTTATAATCTTTGCAATCACTTTAAACAGTATTCTATTGCAGCTGTCTGTCTATCATAATCTGTCAGATATTTTACTCAACTGTTTGCAAAACCATTTGTTCAAAATGCTGATTATGGGTTCCAACAATTTCTGAATACATAACCCttaatattattactagtattacTAATATTATAGTAAAATAGTAATGGATATTACATCCAAGTCCCGTGCACGTCActaacatgcatttgtttgccACATATAACTATTTCGTAAACTTCTTATAATCGCATTGTAAACTATTACAGAGATAAGACATTTTATGGTgcagcaaaaatgaaaaattgaagTCATTATGTAGACTTTTGCCACCTTGAAATACATTATAGAAGTAACAAATGGGGAATCTTACAGTACTTTTTCATTCAAGTTATGTTGATACCGGAACACTTACATTACTTGACGGCGAAGGAATGTTTGCATCTTTTGTATCCAGTTCGTTTCTAACTCCAGAACTGTACTGGCTTGGAGGACACTGGTTATGACTGGTGCATCTCAAACTGTAAGTCATGGATCCATTCAAATAGTACAACCTCCTCGATCATCCTTATAAGATTGGAGGGAACTTGACCTCTCAGAGTTGTCTATTGTATTCTTTTTGTACCTTGGCATGTCAAGCAGACTGTTGTATTTAGGtgtcattaatattttatattgccaGTTATGTGCAACATAATTGTGCACATTCTGTtgtaatattttctattttcataCGAAATTGAAGTGCTTTTTTGTACACACAGCTATTGGTTTTTCTTGCTTGcatgaaaatggaaattaaaatttgCATTTGGTACTCAAGTCTACCCAATAAGCAACCATTATCTTTCATAtagcatattttttatttacaaaaactaTGCCAAGTATTTAAATTGAGAAGCAACCAGGCTATTTTTAGAGTATTTTCAAAGGgaactcatttatttttctttgtggcACATCGATACCTTTGTATTTATgaacataaaatgtacataatatatCGCCATATGAGTGTGCTACTGTTGTATAATAAGGCAAACTATtcataaataaactatttgcaTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40361 lncRNA downstream 116364 8847227 ~ 8852522 (-) False AMCG00019209
TU40245 lncRNA downstream 593482 8338036 ~ 8375404 (-) True G32144
TU40246 lncRNA downstream 629193 8338289 ~ 8339693 (-) False G32144
TU40156 lncRNA downstream 996661 7971193 ~ 7972225 (-) True G32096
TU40129 lncRNA downstream 1210659 7755253 ~ 7758227 (-) True G32076
TU40495 lncRNA upstream 327738 9312434 ~ 9313777 (-) False AMCG00019213
TU40510 lncRNA upstream 365153 9349849 ~ 9352652 (-) True G32351
TU40816 lncRNA upstream 1983433 10968129 ~ 10968403 (-) True G32586
TU40817 lncRNA upstream 1983821 10968517 ~ 10968773 (-) True G32587
TU40884 lncRNA upstream 2134012 11118708 ~ 11119507 (-) True G32635
AMCG00019209 mRNA downstream 67008 8847151 ~ 8901878 (-) True AMCG00019209
AMCG00019203 mRNA downstream 305939 8636550 ~ 8662947 (-) True AMCG00019203
AMCG00019204 mRNA downstream 332338 8627014 ~ 8636548 (-) True AMCG00019204
AMCG00019186 mRNA downstream 1361511 7599869 ~ 7607375 (-) True AMCG00019186
AMCG00019184 mRNA downstream 1469343 7480093 ~ 7499543 (-) True AMCG00019184
AMCG00019208 mRNA upstream 49095 9033791 ~ 9044972 (-) True AMCG00019208
AMCG00019210 mRNA upstream 224644 9209340 ~ 9214704 (-) True AMCG00019210
AMCG00019211 mRNA upstream 238594 9223290 ~ 9250326 (-) True AMCG00019211
AMCG00019213 mRNA upstream 266456 9251152 ~ 9434114 (-) True AMCG00019213
AMCG00019216 mRNA upstream 510686 9495382 ~ 9549803 (-) True AMCG00019216
TU39603 other downstream 4032890 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 6790236 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 6885615 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 6885615 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 7258343 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 4677420 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 5507195 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 5507195 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 5967146 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 6707786 15692482 ~ 15721452 (-) True G33381

Expression Profile