RNA id: TU40432



Basic Information


Item Value
RNA id TU40432
length 1167
RNA type TUCP
GC content 0.41
exon number 4
gene id AMCG00019215
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9329479 ~ 9348819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGACCCATTGTTGTCCTAGTGTAGTGTTTCTGTCAGAGATGGAAGACGTGCTTCTTTGTCCTAAGCTGCTCCTTTTTGATGTTTTGTCTTTTGCCAACTGTGTATTGGAATTAGGGAGTTCATTACTGTAGCCAAAACcaaataatctgttttattctttactcTTCTTGTTAATTTACATCAGGTCTCCTGACCTCTCTGTGACATCGTGTAACAGATAATTTAGTGCTGCCTGGAAGCTTCATAAGTATTCATTTCACATATAGTGtggttttgatttattgttccaccagtaaaaaaataaataaaaaaggttacaGTTATAAATATCTTTGGAACGAGCCATCGTCTCACACAGGGTAGTTAAGATCTCTGTGTTTCAGGCCAGGACATTCAgccctttatttgtttatagtttttcttttataacaCTATATTCTAACTGTTGTACTGTATAACTTCCTTACGGACCTAAGAGAAGGTGTGGTAGGTTTACCAGGGTTGCTCACTTTGTCTCTGAATTTGTCTCGGCTTCTAACTTTTCTGCTTCTCTTCTGGGCTTATGTTCCTCTGTTTGTGCTTTTACACTGTAACCAGAAGATGCTGAATATGGTGCCTATATAAGCGGACTCTACATAGCTGGATTGCGGAGAAGCTTCCGTCTCAGCAGAAGAGACCGGAAGACCAACAAGTCCATGTATGAGAGCAAGAAGAGTGAGCTGTACGACATGGCTGACGTCCCCACATATGAAGAGGTGACCACCTACCGCAGACAGCATGGAGAGAAGTACAGACTGGTGGTTCTGGTTGGACCCACTGGAGTTGGTTTGAATGAGCTGAAAAGGAAGCTCCTCATTTCCGACCCCCAGCACTACAGTGTGACTGTTCCACACACAACCAGAGCCAAACGGAGCCAGGAGAGCGATGGAGTGGAGTATCACTTTATCTCGAAACACTTGTTTGAGACTGATGTTCAAAACAACAAGTAGGTATTGTACAACACAGCAGACGGTAGATAAAGGTGAATCAGTCAGGCACATTTGTGCATGataacatttactttattaatacaGAATATCACTTTAATAAAGGAATAATATTCTAATCTTAATGAGTTACATTGTGAAGAAGAGGACCATGTCAGTCCATCTGCGGTGCATGAGTGTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40431 lncRNA upstream 5416 9308637 ~ 9324063 (+) True G32287
TU40402 lncRNA upstream 106970 9163643 ~ 9222509 (+) True G32268
TU40344 lncRNA upstream 395733 8895239 ~ 8933746 (+) True G32235
TU40198 lncRNA upstream 982186 8345455 ~ 8347293 (+) False G32130
TU40173 lncRNA upstream 1157618 8171645 ~ 8171861 (+) True G32113
TU40434 lncRNA downstream 1030 9349849 ~ 9352655 (+) True G32290
TU40474 lncRNA downstream 344450 9693269 ~ 9750270 (+) True G32321
TU40479 lncRNA downstream 369203 9718022 ~ 9718564 (+) True G32324
TU40482 lncRNA downstream 370220 9719039 ~ 9726753 (+) True G32325
TU40475 lncRNA downstream 393428 9742247 ~ 9750270 (+) False G32321
AMCG00019206 mRNA upstream 273623 9046918 ~ 9055856 (+) True AMCG00019206
AMCG00019205 mRNA upstream 544540 8781781 ~ 8784939 (+) True AMCG00019205
AMCG00019202 mRNA upstream 723359 8577925 ~ 8606120 (+) True AMCG00019202
AMCG00019200 mRNA upstream 788174 8540613 ~ 8541305 (+) True AMCG00019200
AMCG00019201 mRNA upstream 807625 8497875 ~ 8521854 (+) True AMCG00019201
AMCG00019214 mRNA downstream 8279 9357098 ~ 9376745 (+) True AMCG00019214
AMCG00019212 mRNA downstream 58482 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019217 mRNA downstream 277591 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019218 mRNA downstream 305507 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019219 mRNA downstream 328841 9677660 ~ 9714621 (+) True AMCG00019219
TU40197 other upstream 944887 8345455 ~ 8384592 (+) False G32130
TU40199 other upstream 944887 8345455 ~ 8384592 (+) True G32130
TU40051 other upstream 1908396 7420501 ~ 7421083 (+) True G32005
TU39314 other upstream 6118796 3203787 ~ 3210683 (+) False AMCG00019100
TU40438 other downstream 21079 9369898 ~ 9628662 (+) True G32293
TU40734 other downstream 1055820 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 5090434 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5815529 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6695123 16043942 ~ 16081943 (+) True G33406

Expression Profile