RNA id: AMCG00019216


Basic Information

Item Value
RNA id AMCG00019216
length 543
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00019216
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9495382 ~ 9549803 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATAAAAAGCGTCCACAGAAATGGACAGCCACTGAGGGATGTCCTCACCACACACAACACCAAGATTGCCATGCCAACTACAGCTGAAATGGACAAACTGCAGAGGTTAGAAATGTTACTGGAGCCCTGCAGCATTGCGGCATTTGATACTTGTTGCTCCATTGAAGACATGTCGACAATTAAACGACAAGAGGACTGggagggaggaaaaaacaacacaaccgCAGTCAAGACGTTTTCCAGCACCGCCAGGCAGCACGCTCTCCGGTTTATCAAGCCTCGCCTGCCTCGTGGAGGGAAGCCACGGCGCAGAGCTGAACTCATTCATGAGTCAACATTAAAAGGAGTGCAGGGGTTCCTGTACAATaCAGCAAGGAGGCGGGTCGGTGGGCACATGGAGGGGGGTAGGGAACAGTACCTCAATAAAAAGTCACTGAAACCTGAAACGGAATGCGATCAGTGGCGCGACTCGAATAAAGAGCTGTTGTGCGAGGCAGCGAGGGAGAATGAGTTGTGCGACAGATTGGGCACGGCACGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40510 lncRNA downstream 142730 9349849 ~ 9352652 (-) True G32351
TU40495 lncRNA downstream 181605 9312434 ~ 9313777 (-) False AMCG00019213
TU40361 lncRNA downstream 642860 8847227 ~ 8852522 (-) False AMCG00019209
TU40245 lncRNA downstream 1119978 8338036 ~ 8375404 (-) True G32144
TU40246 lncRNA downstream 1155689 8338289 ~ 8339693 (-) False G32144
TU40816 lncRNA upstream 1418326 10968129 ~ 10968403 (-) True G32586
TU40817 lncRNA upstream 1418714 10968517 ~ 10968773 (-) True G32587
TU40884 lncRNA upstream 1568905 11118708 ~ 11119507 (-) True G32635
TU40958 lncRNA upstream 2047013 11596816 ~ 11600671 (-) True G32693
TU40972 lncRNA upstream 2083706 11633509 ~ 11636317 (-) True G32706
AMCG00019213 mRNA downstream 61268 9251152 ~ 9434114 (-) True AMCG00019213
AMCG00019211 mRNA downstream 245056 9223290 ~ 9250326 (-) True AMCG00019211
AMCG00019210 mRNA downstream 280678 9209340 ~ 9214704 (-) True AMCG00019210
AMCG00019208 mRNA downstream 450410 9033791 ~ 9044972 (-) True AMCG00019208
AMCG00019207 mRNA downstream 510686 8968886 ~ 8984696 (-) True AMCG00019207
AMCG00019220 mRNA upstream 164629 9714432 ~ 9726715 (-) True AMCG00019220
AMCG00019224 mRNA upstream 186464 9736267 ~ 9747253 (-) True AMCG00019224
AMCG00019226 mRNA upstream 211919 9761722 ~ 9789110 (-) True AMCG00019226
AMCG00019225 mRNA upstream 251249 9801052 ~ 9812613 (-) True AMCG00019225
AMCG00019223 mRNA upstream 274937 9824740 ~ 9836871 (-) True AMCG00019223
TU39603 other downstream 4559386 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 7316732 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 7412111 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 7412111 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 7784839 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 4112313 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 4942088 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 4942088 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 5402039 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 6142679 15692482 ~ 15721452 (-) True G33381

Expression Profile