RNA id: AMCG00019220


Basic Information

Item Value
RNA id AMCG00019220
length 2920
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00019220
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9714432 ~ 9726715 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCACGTCACCTCTCCAATAGGAAGTTGCTGCAGAAGCGAGCAGCTCTCCACTGAGCGCAGGGCCTTGTGATCCGCGAAACAGCAACGTCAGCCTCGCCTCTGTCAAGTGACAGCTTCCCAAAACACAGACACCACTGGGAAACATGGACGACGACGTGCTAACCACTCTGAAGATACTGATAATCGGAGAGAGCGGCGTGGGGAAGTCAAGtcttCTCCTAAGATTCACAGATGATACGTTTGATCCAGAACTTGCAGCAACTATTGGTGTTGACTTTAAAGTAAAAACTATTGCAGTGGATGGGAACAAGGCTAAACTTGCAATCTGGGACACTGCTGGTCAGGAAAGGTTCAGAACCTTGACACCTAGCTACTATCGAGGAGCACAGGGTGTCATTCTGGTATATGATGTTACGAGACGAGATACTTTTACCAAACTTGACAACTGGTTAAATGAGCTGGAGACATACTGTACCAGGAATGATCTAGTGAAAATGTTGGTTGGGAACAAAATTGATAAGgaAAATCGTGAAGTAGACAGGAATGAAGGCCTGAagtttgcaagaaaacattccaTGCTTTTTATAGAAGCGAGTGCGAAAACCTGTGACGGTGTGCAGTGTGCttttgaagagcttgtggagaAAATCATTCAGACCCCGGGGCTGTGGGAGAGCGAGACTCAGAGCCGGGGCGTGAGGCTGTCCGATGAAGAGCAGAGGGGAGGTGGAGGCTGTGGGGGATATTGCTCCTTggtgtaaaagaaaagaaaaaggaagaaaacaaaggaaacacaaaaacaatagaCATAATTTTCTAACTATTTAAACGGCTTCTGAATTGTATTGCTGTGTTTTATACATTCGGTTGCTGCTATTATAGGGACATTGCTGTTTGCACACCTCCTGGTATCATGGCAGCATTCATTGTTTGTTAATTCCCCCCCGCTGAGCAAAGTTTCCAGATCACGGACGATCTGACGCTCGAGTGCAAACCCCCCGGTCCACGGTTACTGCTCCTGAACAGCAATGGACTTGTCCTGCAAGAGCAAATGAATGTGGTTGATACGAGTCCTAACCCAATCTTATTAAGTCacggaaaaaacaaacacgtcCATCCTCGCTGCCTTTTagagtaaaatgttatttttatcttATATACTTGATGACATGTTTCTTCTATAAGCGCAAAAATGTTATCATcctttcctgtctctgttttgaATGTGCAGATGTTATAATGCATTGTGTCCAGTTAAGCACAAGTTTATCCagaattaaagtaatttatctTCTGTAGTATGTTGCTGCTTTATGCTCAGCATGATCACGCTTGTATTCCAGATTAAAGAGAGCAAACAAAAAGTAACGAAGGAATGCtagattttattgttttatctgcTGAATTGCTGCTTCACGCTATCTAACCAGAGACTTTGGAGTAATGTATGAGACTCTGAATCGGcgattttgtttgaaattataGTAAAGGGCTTTTTGGAACtatgttttattacttttattaacttGGAAGCTACAGTTTAACATGTTTTGATGGGTATATAAATCAAGCGGATTGGCACTGTGGCTTTCTATTGtacactgcaaaaacacaaaaatgcatgtCTAGTGTGGTTTCCATGTTTCCTTAGCGCTTGCATTAATGATCCATATCCCATGCACAATctgtctttcttaaaaaaaaaaaaatacaaaaaaaatcttcataTCAAAGATTTAACTTGCGGAGTCGCATTTAGGATATAAATCATTCCTGGGtctgaaacatttaaagaacTATTAACCTTTATGGTTCGCTGGAACATAATAGATCTACAGTATTTTAGGTACATTagtttttctttgccttttctaaaatccccccccccccccccccaaaaaaaatgtAGCCTGTCCCCCTTAGATGGGTTGAGGGTAGTTTTGTCCATATTCATACCGTTTGACCTGTGTCATGTGCTCACATTTAACCACCAACATGCTGGTAGTACCTGAGTGCCAGAATGGAGATTGATTGAAGGGAATACATTCTGCAGTCCCCACGCTGTCATGGTGGAATTAATTTCGATCGATCATGCTTTGAGACCACCTGGGTGGTAAGGACTGATGCAAAGGCCATGCCTTCtgcctgtgtttatttaaaacattctaatatttcatttgtattctttattttttttaatagcatgtAAAAATTGTATGACTATTTGTGTTGTAAGTAACTAAAATTTATTTAACTCTTCACACGTTTACTCCTTAATAAAGGGTCCTTTATTTGGTGACTATTTTTAAACCAGGTATATACCTTCccacacaactttttttttgttcctaaAACAAATGGTCTTTCCGGGTGTATGTCATGACATTTTTCTTTGGCAATAAACATatgagtttttaaattaaagagtacacaagatttctttttttttttttggtaatatgGGCAAATGCTAACTTAAGTACaatcataaacatataaacaatgtgttttataatgtacTGCAAGTGGGGATGATATTGTAGTATTGCATAAGGTGGCTTTACTGCTCTGCAAAAGGAATGTAAACAACATGCTGTGAATTACAACTTCTCAAAATGGGAGGGAAAACAcgatgtatattaatgtaaatatagtaGGAATCAAATACCTGAACTTAATACTGTAATACATTAGTATCGTAAGGTAGAAGTGTGAGCCCAGGTGTATCGTCAAGATTTTTCTCCATAGGATTCTGAAAAAGGTGGGaagtaaatttaaatgttttccgtGATTGTTTTACAAGgcttaaaactgaaatatatttactgtTGACTACtttattgaattttattttattgtttatgtcaTAGTTATTTCCTACTTTaaccatattaaaaacaattaaaaactaacTATAAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07910 RAB18; Ras-related protein Rab-18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40510 lncRNA downstream 361780 9349849 ~ 9352652 (-) True G32351
TU40495 lncRNA downstream 400655 9312434 ~ 9313777 (-) False AMCG00019213
TU40361 lncRNA downstream 861910 8847227 ~ 8852522 (-) False AMCG00019209
TU40245 lncRNA downstream 1339028 8338036 ~ 8375404 (-) True G32144
TU40816 lncRNA upstream 1241414 10968129 ~ 10968403 (-) True G32586
TU40817 lncRNA upstream 1241802 10968517 ~ 10968773 (-) True G32587
TU40884 lncRNA upstream 1391993 11118708 ~ 11119507 (-) True G32635
TU40958 lncRNA upstream 1870101 11596816 ~ 11600671 (-) True G32693
TU40972 lncRNA upstream 1906794 11633509 ~ 11636317 (-) True G32706
AMCG00019216 mRNA downstream 164629 9495382 ~ 9549803 (-) True AMCG00019216
AMCG00019213 mRNA downstream 280318 9251152 ~ 9434114 (-) True AMCG00019213
AMCG00019211 mRNA downstream 464106 9223290 ~ 9250326 (-) True AMCG00019211
AMCG00019210 mRNA downstream 499728 9209340 ~ 9214704 (-) True AMCG00019210
AMCG00019208 mRNA downstream 669460 9033791 ~ 9044972 (-) True AMCG00019208
AMCG00019224 mRNA upstream 9552 9736267 ~ 9747253 (-) True AMCG00019224
AMCG00019226 mRNA upstream 35007 9761722 ~ 9789110 (-) True AMCG00019226
AMCG00019225 mRNA upstream 74337 9801052 ~ 9812613 (-) True AMCG00019225
AMCG00019223 mRNA upstream 98025 9824740 ~ 9836871 (-) True AMCG00019223
AMCG00019229 mRNA upstream 159553 9886268 ~ 9893224 (-) True AMCG00019229
TU39603 other downstream 4778436 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 7535782 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 7631161 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 7631161 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 8003889 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 3935401 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 4765176 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 4765176 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 5225127 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 5965767 15692482 ~ 15721452 (-) True G33381

Expression Profile