RNA id: AMCG00019222


Basic Information

Item Value
RNA id AMCG00019222
length 1674
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00019222
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9788361 ~ 9792594 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTAGATGTCACACGAACTGCATAGAAAAGCCCATCTGCGTCGCTTTTAAGAAGTTGGGGTGTTTTGTTGGAAAGTATCCTTGGTGTTTTTTTGTCCTGCCTTTGCTGCTCTCGGCTGGGCTGGGaggaggtttttattttgtgcaagaAGCAGAATCCAATGAAATTGAAGACCAGTTCACTCCAACTAATGGCCCTGCAAAAGCTGAACGACAATTTGTCAAGGAAAACTTCCCGATTGAGGAGAATGAGTTTTCTAGTCAGAGACTGTACACTGAAGGGGCCTTTGTGTCACTGATTGTGGTCTCCAAATCATCCCACATTTTAACAGAAGAAGCCTTTGAAGAAATATTAAGTTTAGACAAGACATTGAGACAGATCAGTGTAGTGGACGGCGTTGAGATTAATTATGAGAGTATTTGTGCCAGGACCAACCAGGGGTGCGTTTCCAATGCAATTTTAGATATTGTAGATTATAATGCTAGTAAAATCGAACAGATCCAGCTTAGTTACCCCATATATGACTTTCAAAACGATCCTGTTTTCCTCGGGTCAGCCGTGGGTGGGGTGAAGGCAAACAGCAGCATAATAGAAAGTGCCCAGGCAATAAGACTTTTTTACTATCTAATGGAAAACTACACTTCAAGTGTGTGGATACATGAATTCCTTACAGTGTTTAACAATGTATCTCATATGAAGTATATTGAGgtATCATATTTTACTTCTGTATCAAGACAGGAAGAGTTCGTCGAGAGTGCAAAAGCTATCGTCCCTTTATTTTCGATCACCTATTTCCTTGCCATAACTTTTTCCATTGCATCTTGCATGAGgtTGGACTGTGTAAGGAATAAAGTATGGGTGGCCTCCACTGGTGTCTTCTCTGCAGGTCTGGCAGTGCTGTCTAGTTTTGGTTTGTTGCTGTGGTGTGGAGCGCAATTCTCAATGACTGTGGTAAACTCCCCATTCTTGATCTTAGGGATCGGTGTTGACGACATGTTCATTATGATATCCTGCTGGCAGCAAACGAAGGTTCATGATCCAGTCGAGATCCGTTTGGCAGAGACATATAAAGAGGCCGCCGTGTCCATCACGATCACCACTCTGACTGATGTCTTGGCTTTCTACATCGGCATCATGACGCCCTTCCGGTCTGTGCAGTCTTTCTGCCTCTATACTGGCACTGCTGTCCTGTTCTGCTACTTttacagcattacattttttggggCTTTTATGGCTTTGAAtggaagaagagaagagagtaACAGGCACTCTCTGACCTGTATGAAGGTACCAAGAAAGTGCCTTGATGGGCACTCCAAAGGGTACAGTATTTGCTGTGTTGGCGGGTCATATGAAGAAGAGACTGGCAGGGAGAAACCACAACCAATTAACAGTTTCTTTAAGAATTATTATGGTCCTTTTCTGACCAAAACCTGGACTAAAGTGTTTGTGATCTTGCTGTATGCAGGGTATCTGGCTGCCAGTATTTACGGGTGCATCCAGATGAAGGAAGGTATAGACCTTAAGAATCTGGCATCGGATGATTCATATGTAGTTAACTATTATGATTATGAGGATAAATATTTCTCTGTCTATGGTCCAAACGTTATGGTAGTTGTGGAAAAAGAAGTGGAATATTGGAATAACAGCATCCGTACTGAACTGCAGTCA

Function

GO: NA

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40474 lncRNA upstream 38091 9693269 ~ 9750270 (+) True G32321
TU40475 lncRNA upstream 38091 9742247 ~ 9750270 (+) False G32321
TU40482 lncRNA upstream 61608 9719039 ~ 9726753 (+) True G32325
TU40479 lncRNA upstream 69797 9718022 ~ 9718564 (+) True G32324
TU40428 lncRNA upstream 316518 9261374 ~ 9471843 (+) False G32286
TU40581 lncRNA downstream 17290 9809884 ~ 9812637 (+) True G32418
TU40608 lncRNA downstream 124726 9917320 ~ 9920036 (+) True G32437
TU40671 lncRNA downstream 316312 10108906 ~ 10109150 (+) True G32490
TU40745 lncRNA downstream 670569 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 1585362 11377956 ~ 11448251 (+) True G32671
AMCG00019227 mRNA upstream 42724 9732190 ~ 9745637 (+) True AMCG00019227
AMCG00019219 mRNA upstream 73740 9677660 ~ 9714621 (+) True AMCG00019219
AMCG00019218 mRNA upstream 124475 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019217 mRNA upstream 159703 9626410 ~ 9628658 (+) True AMCG00019217
AMCG00019212 mRNA upstream 374175 9407301 ~ 9414186 (+) True AMCG00019212
AMCG00019221 mRNA downstream 20796 9813390 ~ 9824416 (+) True AMCG00019221
AMCG00019237 mRNA downstream 80991 9873585 ~ 9884570 (+) True AMCG00019237
AMCG00019236 mRNA downstream 101267 9893861 ~ 9905733 (+) True AMCG00019236
AMCG00019234 mRNA downstream 147232 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019235 mRNA downstream 478025 10270619 ~ 10279108 (+) True AMCG00019235
TU40438 other upstream 159699 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 249150 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 439542 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1403769 8345455 ~ 8384592 (+) False G32130
TU40734 other downstream 612045 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4646659 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5371754 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6251348 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10814880 20607474 ~ 20610889 (+) False G34170

Expression Profile