RNA id: AMCG00019225


Basic Information

Item Value
RNA id AMCG00019225
length 2798
RNA type mRNA
GC content 0.45
exon number 19
gene id AMCG00019225
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9801052 ~ 9812613 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCAGCTGCGAAGGAGCTACGGGGGAAAAAGGACGAAAGTGGGGGGTTCAGGATTTAACAATCAATATTAAACCACTGCTGTCAACATTGACTTTGTTACACAGCATTGGACATGTTCTCTCTGTCGACCACGGTTCAGCCACAGGTAACCGTCCCTCTGAGTCACCTCATCAATGCCTTCCATTCCCTGAAAAGCTCAGCCAGCTCTGTAAGCACGGCATCTGTTCagtgtctgcagagagagaccACTCTAGAGCTTGACCTTCAGAGCAGCGAGCCCACATTAAACTTGAGGGATTTGGGCCTGACCGATCTGAGAGTTAGTCAGCTGGATGACCTTGTGAACAGACTTCTTCCCAGTCTCTCCACAGAGCAGCACCCCAGCCAGTCTTACTGGAGAACATCCCATGTCTCTGCAGAGTccttctttcaaaataaacatgGGTTCTCAAGCAGAACATTTGGTGTTCTGGGCTCCATGGCACTTTACAGACACAGCCCTAGTCCTCTACAGGCGGTTTGTTCAGACCTTCAGCACTGGCCAGtgtgGATCCAAAGTCGAGGCTTTAAAACGCTTAAATCCAAAACCAGACGCCTGCAGTCGAGTTCCGAGCGTGCTGCCGAACCAGAAGGTTACACTCCATCCTTCATGaagGGACTCCTGACGAGGGACAAGGTACCTGAAGTAGAAAGTTTAGACaaacttttgaaaaataaaaatatccccGATTCCCAGCATGATGCGTTCAAGACTGGATTTGCAGAGGGGTTCTTGAAAGCACAGGCACTCACACAGAGAACACAAGGCATGTTTTCTACCTATTCTTTGAGGAGGACACGGCTCATTCTGTTGGTGCTCCTGGTGCTGGGTATATATGGGTTGTCAAGAACACCCTTTTTATCTGTGCGATTTAGAACAACATCTGGACTTGATGCTGCTGTCGATCCTATCCATATGAAGAATGTCACATTTGATCACGTGAAAGGGGTTGAAGAAGCAAAACATGAACTGCAGGAAGTTGTAGAGTTTCTTAAGAACCCAGGGAAATTCACAGTGCTGGGTGGAAAGCTGCCTAAAGgcaTCCTTCTTGTTGGTCCACCAGGCACAGGGAAAACCCTGTTGGCACGAGCTGTGGCTGGTGAGGCCGATGTGCCGTTTTACTACGCCTCTGGCTCCGAGTTTGATGAAATGTTCGTTGGAGTGGGAGCCAGTCGCATCAGGAACCTCTTCAGGGAAGCAAAAGGCAATGCACCTTGTGTCATCTTTATTGATGAGCTGGACTCTGTTGGTGGGAAGCGAATTGAGTCTCCTATGCACCCCTATTCCAGACAGACCATAAACCAGCTATTAGCAGAGATGGATGGGTTTAAACCAAACGAAGGGGTCATTATTATAGGAGCAACAAACTTCCCAGAGGCTTTGGATAATGCTTTGATCCGTCCTGGACGCTTTGACATGCAGGTCACTGTTCCCATACCAGATGTGAAGGGGCGCACAGAAATCCTCAAGTGGTACCTCGACAAAATTAAAGTGGATTCTGCGGTTAATGCCCAAATCATTGCCAGAGGAACAGTGGGCTTCTCTGGAGCCGAGCTGGAGAACCTGGTGAACCAGGCCGCCCTGAAGGCCGCAGTGGATGGGAAGGACATGGTCACCATGAAGGAACTGGAGTTTGCCAAAGACAAGATCCTGATGGATGCTATGCCCATCAACAAGGCTACAATTATGCCAAGAGGACCTACTCTTGGTCATGTATCAATGCTCCCAGAGAATGACAGATGGAGTGAAACACGTTCTCAGTTGCTGGCACAGATGGATGTCAGTATGGGAGGAAGAGTGGCCGAGGAGCTTGTATTTGGACATGAAAACATTACTACAGgcGCATCAAGTGATTTTGACAGCGCAACCAAAATTGCAGTTATGATGGTGACCAAATTTGGCATGAGTGAAAAGCTGGGGGTGATGACCTATGGGGACAAGACAAAACTCAGCCCCGAGACACAAGCTGCTATTGAACATGAAGTGAGAATACTCCTGAGGGATTCATACGAGCGAGCTAAAAACATCCTGAAGATGCATAATAAAGAACACAAGAACTTGGCTGATGCTTTGTTAACGTATGAGACTCTGGATGCCAAAGAGATTCAAATGATTCTGGAAGGAAAGACACTGGGGGTGAGATGATGATTCTGGCACAGACTGCTGCGATTCTCCTGAATGTAAATATGCAATAGAGCAAGGGAGGGGGGCACTGAATGAAATTgtctagtttatttttcttaatatatgactatgtatacacattttatcCACCTTAGTATTTTCCTTCAAATATTCTGGGCAGGATTGGGGTTTCATGTGGGAATCATTTATCTTTTCCCCCATTGTGTCTTTAGTGAACAAATCACTGACGCTTCCCTACAAGTCAAAGGTATCTCAGGTGTACAGGCAGTTGACTTCAGAGTCATCAGTGTTTTGTAGAGTGTGTGTGgactctatttatttttatgttacatttttaatgtccGGTTCTGCCTTGAAAGTCTATAATGGAGTGTCCTTTGCTGTGTTATTACAGTAGGGTGTGTTACCTGATCACATCATACCTTTTATTTCCAACAtccagcattttattttctttttttcttttcatgattTGCTTTGTCAGTATGTACCTGAGAGAAGTGGAAAATACACctcaataataaacattaaaatttgCTTGAAatggtgattttattttggaCGTATTTAATTGACAACTGTCATATAAAACCTGAATTGTTTAAGGCCAAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40510 lncRNA downstream 448400 9349849 ~ 9352652 (-) True G32351
TU40495 lncRNA downstream 487275 9312434 ~ 9313777 (-) False AMCG00019213
TU40361 lncRNA downstream 948530 8847227 ~ 8852522 (-) False AMCG00019209
TU40245 lncRNA downstream 1425648 8338036 ~ 8375404 (-) True G32144
TU40816 lncRNA upstream 1155516 10968129 ~ 10968403 (-) True G32586
TU40817 lncRNA upstream 1155904 10968517 ~ 10968773 (-) True G32587
TU40884 lncRNA upstream 1306095 11118708 ~ 11119507 (-) True G32635
TU40958 lncRNA upstream 1784203 11596816 ~ 11600671 (-) True G32693
TU40972 lncRNA upstream 1820896 11633509 ~ 11636317 (-) True G32706
AMCG00019226 mRNA downstream 11942 9761722 ~ 9789110 (-) True AMCG00019226
AMCG00019224 mRNA downstream 53799 9736267 ~ 9747253 (-) True AMCG00019224
AMCG00019220 mRNA downstream 74337 9714432 ~ 9726715 (-) True AMCG00019220
AMCG00019216 mRNA downstream 251249 9495382 ~ 9549803 (-) True AMCG00019216
AMCG00019213 mRNA downstream 366938 9251152 ~ 9434114 (-) True AMCG00019213
AMCG00019223 mRNA upstream 12127 9824740 ~ 9836871 (-) True AMCG00019223
AMCG00019229 mRNA upstream 73655 9886268 ~ 9893224 (-) True AMCG00019229
AMCG00019228 mRNA upstream 91550 9904163 ~ 9924355 (-) True AMCG00019228
AMCG00019232 mRNA upstream 146857 9959470 ~ 9977696 (-) True AMCG00019232
AMCG00019233 mRNA upstream 169123 9981736 ~ 10034056 (-) True AMCG00019233
TU39603 other downstream 4865056 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 7622402 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 7717781 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 7717781 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 8090509 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 3849503 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 4679278 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 4679278 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 5139229 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 5879869 15692482 ~ 15721452 (-) True G33381

Expression Profile