RNA id: AMCG00019233


Basic Information

Item Value
RNA id AMCG00019233
length 4686
RNA type mRNA
GC content 0.47
exon number 34
gene id AMCG00019233
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9981736 ~ 10034056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cTTTGCAATGGTGGATCTGTTACAGATCTTGCAAAAGGTTTGCTGAAGCGAGGAGACAGAATGGACGAACCGATAATTGCCTACATCTTACATGAAGCCCTTATGGGTCTTAAGCATTTACATGATAACAAGACCATCCATCGTGACGTCAAGGGCAATAACATCCTACTAACAACGGAGGGAGGAATTAAGCTTGTGGATTTTGGTGTTTCTGCCCAACTGACAAACACTCGCCTCCGCAGAAATACTTCAGTGGGAACACCTTTTTGGATGGCACCAGAGgtaATTGCATGTGAGCAGCAATTAGATTCTACTTATGATGCTCGATGTGATGTGTGGTCGCTTGGTATTACTGCTATTGAGCTAGGAGATGGAGACCCACCACTTGCTGACCTGCATCCTATGAGAGCTCTCTTTAAAATACCAAGAAACCCACCTCCAACCCTTCACCAACCAGAGCTGTGGTCTGCCGATTTCAATGACTTTATTTGCAAATGCTTAATTAAGGACTTTGAGCAGCGGCCTAACGTTCCAGATCTTCTGCAGCATGCCTTTATCAAACAAATtgtgggaaaagaaaaaatcctaCAAAAGCAGCTGATGGAACTCATCGACCTCCACCAGCAAATGGGAATCATTGAGAAGACAAGACATGAACGCATTCATACCAAGAAAGGCAGCTACATGAAGTCCGTAAATTCCTGCGAGGATAATGTGGATGATTTGGCCACATTAGAACTGCTCGACGAAAATACAGTCACCGAGCAGCTGCAGAAGCGCTACTCCAATGGCCAGATCTATACCTACGTGGGAGATATTCTTATCGCAGTCAATCCTTTTCAGAAGATGGATCTGTACACCCCACAGTgctcaaaaatatacattgggGCCAAACGCACTGCGAACCCGCCACACATCTTTGCTGTTGCTGATATAGCCTACCAGTCCATGGTGTCTTACAATGCGGATCAGTGCATCGTCATCAGCGGTGAGAGTGGTTCTGGGAAGACAGAGAGTGCCCATCTTCTGGTGCAGCAGTTGACAGTCCTTGGAAAGgCCAACAACAGAACACTTCAGGAAAAGATTCTGCTTGTTAATAGCCTAGTGGAAGCATTTGGAAATGCTTGCACAGTCATAAATGACAACTCCAGCAGGTTTGGGAAATACTTGGAAATGAAGTTCACTTGTGGTGGAACAGTGATTGGAGCCCAGATCTCAGAATATCTTCTGGAAAAATCCAGAGTCATCCACCAAGCTTTaggagagaggaacTTCCATATTTTCTATTATGTCTACGCTGGTCTGGCTGAAAGGAAGAAACTCGCACATTACAAGCTGTCTGACAACAAAACCCCAAAGTATCTTGAAAGTGAGCACGTTAAATTATTACCTGACATTGTGAACAACGCCTTTTACAAAGAGCAATTTGACTCCGTGGAACAATGCTTCAAAGTCATAGGATTTAACCTTGAGGAGCTGGGAAGTGTTTACAGCATTTTGGCTGCCATTTTAAATGCTGGTGACATTGAGTTTGCATCAGTTTCCTCTGAGCACCAGACTGACAAGAGCAATATTTCAAACACTACAGTGCTTGAGAGTGCCGCGTCTCTTCTCTATATCCGGGCGGATGAGCTGCAGGAAGCTCTCACGTCGCACTGTGTTGTCACTCGAGGAGAAACCATCGTCCGCCCCAACACTGTGGAGAAGGCCATCGAGGTGCGAGACGCCATGGGCAAGGCTCTGTTCGGCCGCCTCTTCAGCTGGATAGTGAACCGCATCAACACATTACTCAAACCTGACACCCAGCTGAGaattcataaaaaaagaagCCAAAACGAATACCTGAATGAAGACGTGGATGCTCGAGTGATTGAGTATGAGGACAACCGGCCTCTTTTGGATATGTTTCTGCAGAAGCCAATGGGCCTGCTCTCATTGCTGGATGAGGAGAGCCGATTTCCTCAAGCTACAGACCAAACCCTTTTTGAAGATAATCTAAAATCAAAGAACTTCTGGAGGCCAAAGAGGGTTGACCTAAGCTTTGGGATTCATCATTATGCTGGGAAGGTAATTTCTTTCACATACTCGATGCATTTTCAGAACAACAGTGCAGTGGATCTAGTTCTCTACAACGCCAGTGGCTTTCTAGCAAAGAACAGAGATACTCTTCCTGCAGATATTGTCCTTTTGCTGAGGTCCTCTGAAAATGATCTGATACGCAAGCTTGTCACCAATCCTCTCACGAAGACAGGTAACCTGGCCCATACTAAGGGTAAAGCGGCAGGAAGCAATCGTAGTACTCAGCGCTCCTCAAATACTGCCAAGtgctGTTTCAaaattttgtttgaaaatATGGAAATGCTTGTGTTGTTCAGTTCATTATCAGTCTGTGAGGGTGACAGCGGGGAGTCTGCACATCATCCCAGAGAGACAACCAACATGAGAACACAAACTGTTGCATCATATTTCAGATACTCTCTCATGGACCTGTTGTCCAAGATGGTGGCCGGTCAGCCGCATTTTGTCCGCTGCATCAAGCCCAACAACGATCGCCAGGCCAGCAAGTTTGACCGGGAGAAAGTGCTCGTCCAGCTGCGCTACACTGGTGTCTTAGAAACCGCAAAGATCCGGAGGCAGGGCTATTCTCACCGGGTTCTCTTCGCCAACTTCATCAAGAGGTATTTTATTCTGGCATTTAGTTCAAACGAAGACCCTCCTGTGAGCCCAGAAACCTGCGCTGCAATATTGGAGAAGGCTAAACTTGAGAACTGGGTCCttgggaaaacaaaaGTGTTCCTGAAGTACTACCACGTGGAGCACCTGAATCTGATGATGAAGGAGACTGTGGACCGAATAATCCTGGTTCAGGCTTGTGTGCGAGGCTGGCTTGGAGCCAAGCGATACCGCAGACTGCGAGAAAAGAGGGAACAGAGCGCAGTGGTCCTCCAGTCCGCTTACAGAGGATATAAAGTTCGAAAAGAGCATGTAGGTGAAAGAAATACAGCCAAGAATGTGACTTTTATCACCCAACTACAAGCTGTTTGTAGAGGATACCTCGCAAGGAAGAAGTACAAGGAGATAgtggatgaaaaaaacaaggctGCTGTAAAGATCCAAGCTCGCTATAGAGGACATAAGGAGAGAAGGagcttcaaaagaaaaaaGGAAGCAATGATGAAAGACAAGCAATCAGCAGACACCAATTCAGTTCAGGAGCAGTCGGGTGAGGAGGCAGCGCCACAGGAGACGCCCAGTGAGAATGGggaccagcagcagcagggtgaTGAAACGAAGCAAGAGCACGCAGCTGTCGTTCTCCAAAGCAACTACAGAggttacagagagagaaagcggTTAAAGGAAGAGCAAGAATTTAAACCTGATGACTTTGCAGATTTACCTCCCCCAGTTGATGAAGATGACATCCAATTGGAGTTGGTGAGCTCTGAAGAGGAATCCCCTGCAAACACCGACGAGCAGGCCAAGGCTGCCACCGTCATTCAGAGCAACTTCCGAGGACACAGAGAAAGGAAGAAGCTTGAGGAAGAGGGGAAGATCCCTCCGAGGGGAAAGAAGGCCAAGGCCACTGAGGAAGAAACGCAGCCGGATAAAGAGTCTGTAAAATCAGAGGAGGAGAAGACCGAGGTGACACCAGGGAATGAAAAGGATGAAGCCAAAGCAGCGGTGGTCATCCAGAGCAACTTCCGCGGTCACAAGGAGCGGAAAAGACTGCAGCAGGAAGGAAAAATACCCAACAGAAAGGATGTCAAAAGGGAATCGCAGGAGATACCTGCGGCGGTGGTGGAAGAGCCAGAGCCGCCCAGTGATGGGGGAGGAATTAAGGAGGAGAGAGCAGCGACTGTCATCCAGAGCAACTACCGGGGTCACCGGGAGAGGAAGAAGCTGAAGGAAGACCGGGAACAGGGAAAAGTCCCAGGTCAAACTAACGTACCCCCGGCGCCTTCACTTGCACTTTCCAGCCCTGAAGACACCAACCGGAATGAGCTGAGCGAGGAGGAACAGGCGGCCGTGACCATCCAGAGCAACTTCCGCGGCTACAAGGAACGCAAGTACCTCAGAGAGAACTCCAGTAAAGACACGGATGAGCTGGAGATATTTTCTAAACAAATAAGCAAGTTTTCCGAAGACTACTTAACTCTTCAGCAAAAGTTGAATGAAATTATTTTGGCACGTCAGTTAAACCCATTAAACTATGGTATGTTCGTCAAAGGAAAGCAACTCAATGGGTACCCTGCAAATTATCCCCCACCAGTAGTAGATCAGAAGCAGACAAGGATGCCCAGACGGACCCAGCAGCCAAAAACTCTGAACACAGCTGAAGACTCAACCTACTACAACCTGATCCATAGATCAGTCCAGGATGATAAACGGAAGCCAAGGAAACAAAGTCCAGGGAAACTATTGGACGATGAAGACTCTTACTACCAAGACCTTTCCTCCAGTAACTCTGTGAACACAAATTCCAGTCCAATTGCCTCACCTGACCAAACGTCTTCTAGCAAAGGGCCATCTTCAGAGCCAAAGGCCCCAGAAACCAACAGCACTGGAAGACACCCCCTTCCCAAAATGCCATCAACAGAGAGCCAGGAGGAAAGTAATCCCTATGATTACAGAAAACTACTTCGAAAGACATCCCAGAGACAGAGACTCATCAAGCAATACTAG

Function

GO:

id name namespace
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K08834 MYO3, DFNB30; myosin III

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40510 lncRNA downstream 629084 9349849 ~ 9352652 (-) True G32351
TU40495 lncRNA downstream 667959 9312434 ~ 9313777 (-) False AMCG00019213
TU40361 lncRNA downstream 1129214 8847227 ~ 8852522 (-) False AMCG00019209
TU40245 lncRNA downstream 1606332 8338036 ~ 8375404 (-) True G32144
TU40816 lncRNA upstream 934073 10968129 ~ 10968403 (-) True G32586
TU40817 lncRNA upstream 934461 10968517 ~ 10968773 (-) True G32587
TU40884 lncRNA upstream 1084652 11118708 ~ 11119507 (-) True G32635
TU40958 lncRNA upstream 1562760 11596816 ~ 11600671 (-) True G32693
TU40972 lncRNA upstream 1599453 11633509 ~ 11636317 (-) True G32706
AMCG00019232 mRNA downstream 4040 9959470 ~ 9977696 (-) True AMCG00019232
AMCG00019228 mRNA downstream 57381 9904163 ~ 9924355 (-) True AMCG00019228
AMCG00019229 mRNA downstream 88512 9886268 ~ 9893224 (-) True AMCG00019229
AMCG00019223 mRNA downstream 144865 9824740 ~ 9836871 (-) True AMCG00019223
AMCG00019225 mRNA downstream 169123 9801052 ~ 9812613 (-) True AMCG00019225
AMCG00019231 mRNA upstream 14593 10048649 ~ 10052298 (-) True AMCG00019231
AMCG00019230 mRNA upstream 68495 10102551 ~ 10105694 (-) True AMCG00019230
AMCG00019239 mRNA upstream 110249 10144305 ~ 10158368 (-) True AMCG00019239
AMCG00019240 mRNA upstream 203214 10237270 ~ 10238088 (-) True AMCG00019240
AMCG00019241 mRNA upstream 204371 10238427 ~ 10318815 (-) True AMCG00019241
TU39603 other downstream 5045740 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 7803086 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 7898465 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 7898465 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 8271193 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 3628060 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 4457835 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 4457835 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 4917786 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 5658426 15692482 ~ 15721452 (-) True G33381

Expression Profile