RNA id: AMCG00019235


Basic Information

Item Value
RNA id AMCG00019235
length 1476
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00019235
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10270619 ~ 10279108 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCCATTGAAACAGCAGATGCGCTCGGACAGCAATAACGTCACACTTGAACCTCATTaactaattgtttgtttttttgtttgtaactaAACATGTCCGCTATGTATCCTGCCGAAAGCATTTATAACCTTATTCCCAAAGAAGAGGTTACAGTCCAGAAACCACCGAGATATACATCAAAGTTTAGGGAACAAGTTAAACAGGATACAAAAAAGAACAAGGCTGCAAACAGAACCATGGGGCCAGCAAAAGTAGAGGTACCTTCACCCGAAAAGTTTCTGCTGAAACATTCAAAGGAACCCCAGCTTCCTGAAAAGAAACCATTCACTCGTAAAGATGATGGAAGGAGAAAACCTCAAGTGCCTACAAAGACTGATTACCCAGTTATGGGCATTCAGACGAATACGAACTTTATAAACTCCAATGCAATTGAAAACATTATGGCAGTGCCGAAGAAGCCACAGCATGTCTACGTTGATACCAGAACAGGAAATAAGCAGCCTTTGGAAACTTCAGGACTTGTTCCAAAATATGTCAAGAAAAAGGACTATGGTCAAACCCCGGAATACCTGCTGCAGCGCAACGAGGAGGTGAAGAGAGCTCAGCAGGAGTACGACGACTATGTGAAGGAACGACTCCGACAGGGAGCGATGCAACAGCTCTCTGAGGAGCAGAGGCAAACACTTCTTGAAGGTCTGAAGAAGAACTGGGGAGAGCTCCATCACCAGTACCAGGGCCTGTCTGTGGTCACTGACACAACACCTAAGAAAAACCGCAAGGAGAGGCTGGAGTCAGAGATGAAACAGCTGGAGAGGGACATCGACCACATTGAGAGACACAAAATCATTTATATCGCAAATAACTAAAACAGAAGGACTTATTGCACATAACAAGTGTCcttcattgaaaaaaataaagtagcggtttcaaattgcaaatattattgACTAGTTCCAAGCAGCACCAtcttctgttttatgtttttaattcatccCATTTATTGTGTATGCATTCCTACAAGGCAAGATCATTTCGGTGggcaatgaaaatgaaattcaaaatgtctgtggacatttaatacacattattgctctttgGCCTCTTTCAAATAATCAGTTGTGCATGGATTAGTGTTGAACAGTTTGGCCCTTTATGTATCTAAGCAATTTAAATGATCcaatgaataaaaacatcacataaaaagagattaaaataaatattaccatgatgttttattaaacatacaaaacaaaaataattgaaaactatAGCTCCGTTAATAATGAGCAGAGCAaacagtatgtgtgtttgtaacaTAAATAATCCTCTTATGTTCATGAGTTTGGTGTTCATGAATCTGAAATAAGGTTGTGCAATTGTAGCCGTAAGTAGTGATGTATAAAGTGTTAATCCTAACCTCTCACTCTTTTAAAATAGTTCTAGtggtacaataaaataacacataataCGATTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40671 lncRNA upstream 161469 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 350583 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 457982 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 520349 9742247 ~ 9750270 (+) False G32321
TU40482 lncRNA upstream 543866 9719039 ~ 9726753 (+) True G32325
TU40745 lncRNA downstream 184055 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 1098848 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 1353250 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 1353250 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 1721855 12000963 ~ 12001164 (+) True G32778
AMCG00019234 mRNA upstream 323573 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019236 mRNA upstream 364886 9893861 ~ 9905733 (+) True AMCG00019236
AMCG00019237 mRNA upstream 386049 9873585 ~ 9884570 (+) True AMCG00019237
AMCG00019221 mRNA upstream 446203 9813390 ~ 9824416 (+) True AMCG00019221
AMCG00019222 mRNA upstream 478025 9788361 ~ 9792594 (+) True AMCG00019222
AMCG00019238 mRNA downstream 3881 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019242 mRNA downstream 52007 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019245 mRNA downstream 369471 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019248 mRNA downstream 422168 10701276 ~ 10709432 (+) True AMCG00019248
AMCG00019254 mRNA downstream 798863 11077971 ~ 11087695 (+) True AMCG00019254
TU40438 other upstream 641957 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 731408 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 921800 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1886027 8345455 ~ 8384592 (+) False G32130
TU40734 other downstream 125531 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4160145 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 4885240 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 5764834 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10328366 20607474 ~ 20610889 (+) False G34170

Expression Profile