RNA id: AMCG00019236


Basic Information

Item Value
RNA id AMCG00019236
length 3512
RNA type mRNA
GC content 0.40
exon number 14
gene id AMCG00019236
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9893861 ~ 9905733 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTGGCCCTTGATCATGTCAGTGACAATTTAGTCCGCAAAGTGAAGAATTGCGTGTTCTCTGTATCCCAGCCTACCCCTCTAAAAGGTACACTGACACTTGCTGCAGTGTCAAAGGATGTCCTGGAGGACATTTTAGATGTAGAGATTTCTGTGTCACAGTCAGACGATTTCCTCCAGTTCTTCAGTGTGTGTTGCAGAGACGGGGATGGGCGAGCTGTCGTGCGCTCCTCAGTGAGGGAGTTTCTGTGCAGCGAGGCCATGCATTTCCTAGGCATCCCTACGAGCAGAGCAGCCAGCCTCATTATCAGTGAGGAGCCGGTGTGGAGAGACCAGTTCTACAACGGCAGCGTGAAAATGGAACGAGGTAAGGAAGACGgcaaagtttattttagtgAACAGTGCATAACACAGAAGGTTTTCTTTTCCAATGTTGTGAATGCTACAGCTAATCTTATATCTCTGTGGATGTCAGTAGGCTTTTCACATGGAGTGTGCAATACAGACAACTTCAGCCTACTTTCAATTACAATTGATTATGGCCCTTTTGGTTTCATGGAGTCCTATGATCCCGATTTTGTACCGAACACATCTGATGACGAAGGCAGGTATAAAATAGGAAACCAGGCAAACGCCGGTCTGTTCAACCTTGATAAGCTTCGTGAGGCACTGAATCCTGTACTCAGCACTAAGCAACATATTTtAGCCAAGGAAATCCTAAAGGAATATCCTCATATTTACGAAAGAagGATTCATGAGCTACTTAAAGCAAAATTAGGTTTACTTGAAGATCAAGAGCACGATGGATACTTGATTGCATACTTACTGAAGCTAATGGAAGACACAAGAGCAGATTTCACCATGACATTTCGTTCGTTAAGTGAGATTTCTACCCAGCAGTTACAGGGCCTCAACATTTCAAAGGAATTCTGGGCTCTTCAAGATCTCGTCAGCCATGAGGGCTTTTCTGAGTGGCTCACACTGTACCTCCTGAGACTGAAAGGGAATGGACATGATCTGGATGAAGAACGACAGCGGAGAATGAGACggGTAAATCCAAGATACATTTTGAGGAACTGGATGGCAGAGTCTGCGATCAGAAAAGCTGAAAAGCACGAGTTCTCTGAGGTGCGGCTGTTACAGGAGACACTGCGCAGGCCCTTTGAGCAGCAGGTCGCAGCAGAAGAGGCCGGCTACGCCTCTCGCCCCCCCGGCTGGGCTGAAGACCTGCGTGTGAGCTGTTCATCTTAACGGCTGCCTGGAGGACACAGCAGGCTGAGATGCACATATACGGTCTGTAAGCTGTCGGAGTTAGAGCCAGGCTCACACCAGTTGTTCTACACCCTGGGTCTCTTAGGCACAGACATAGCAAATCATGACTTTGTAACTGTTTGACAAAAGACGGTGTCATTCATTGGTCGAAAAAGTTTATAAGATGGATTTGGTTTCTTGCACTATAGTGTTAATGTGCTATCTTGCTTCAAAGGATTTTTAAGGAACTTAAGAGGAATTTGCAGTTTCTCTTGAGTTAACTGTTTATACCTCTCTGTGCCTCAGGTTGTCTGTTGAGAGACAGTCTTCCTCAGGGATAAACTAGTTTTACGGGTATATGTTTgtacacaacatttttaaaaataccatgtgtcatatgtttattatgtttaatgtttccatacttttgtgtttaatttgccCAGGTTTTCTATCATTGATCTCACTGCTGATCATGAGTAAGTTAATTGTATGATCTATTCtgcaactggaaaaaaacaccattccAATACTAGTCCAACATTCCAATAcctatgttaataaataatccTAAAAAAAAGTAACGGTATCATAAAAATATACGGGTGAATGGTGATGCTGATGCACTGccatatacaaaacatttaatacatcaTTCACTTGTATAAAGAAATGACGAGGACAACatagtttatttcagtttttttttttcttcattgaagtaatacaattgctgattttattcacaataaaaatacaaaaagaaaaagaaaaaacactttaccTGTATTCTATATGTAATCTCTTATGCAGTCATTCAGTATGTGTAGTTACACTAAATACTATCATGCTATTTCACATAAAGTTTTCCTGAAAGCAGTAAGTATTGGTGTACATGTTTACAGTTGCTTCCAAATAATTAACTTTGTAAAATGGTAATATATGCCCTCATATATCAATAGCAtagctgttaaaaaataatgatatgtaTATCTTAATGCCTTCCGAGTACCTTTCAGTGTTAAAGGAGGGTGTGCACAGAAGCACACAGTACCATTTATCGTTGTGTGGGAAAAATCTGATCGTTATTACAGGATTTATATCTCTAAAGTCAGAAGTGAAATCAAAGGGGATTTTCAGGGTACTCTGGCATCATCCACAAGCACCATCAGCATCTGCAAGAGTACAATTCAGTGACAGTCGCATGAATCTGGTGTCCTTCTGTGGTTCGCAAGGAGATGATAGTCTTCCAGTGACAACATATAGAAAACACACATAACGAATTCCGGTTTCATTTAGGACCACGTTTTGCTGTCAGATGACACTGAACAACATGTAGATCAGAAGTATGTTTGCAGCCAAACCAATTTAAATTCATGCTGAGAAATGTGATCCCATCAGTGAAGAACACTTTGGATCCATGTTACATCCTCCGGCCCTGGTGCTCTTATTTGAATTGTGGATTGGTTCCAGAGTTTTTCAGGATATCTCAGCCAGACACATGGTGTCCTTTGTGAAGAAACCCGAGTTTGGATGCAGTAATCTGGATGCAAGTTTGGAATTCAGCATCGGAAGACAATCCAAAGAACACATCCAAGTCTACAACTGACAGGTTAAGGAAGCTTAAAACCAACGTTCTTCACCTCAGTATAAGATTTGTGTTAAACCCAATCAAGGAAAAGCAGTGCAGGAGAAAATACTGCGTGGACAAGTGGTCAGAAATCCCTCTTGAGAAATGCTTGTGTCTATTAAAAGGCTGCAGAAACCATCTTCTTGGAAAGCCAATGAAGcagcataaatatatacaattattttttacaggtaTGTTAGtaatatacacaatattgttgttcatacgttgataaattaaaacattaaaaacatgaaaaaataataaaaaatacagaattaaaataagcGAACTTCAGAATGTTGTCAGAACTTCAAGATGCATGGATAATCCTTTCTTTTCAAATTTTCACTAGGAaatggaatacaaaatctcatcCCATCTGACCTTTATGAGTGACTCCACTGTATGGTCTTGTATGTATCAATGGCAAAATATCTCTCCACCCCAAATAGTTTGGGGCTTACAAGTCACAGTAAAATCAGTAAGGCTGTATTGTAATAAGGACAGATCCTCATTGCTGGTGTTTCTTCTGCATGGCTTTCATCAGTTCTGACATGAAGTCTTGCTGCCCACCCCCAGTGGAAGCTGCTGATGGGGTGGTCCTCTTTGGGGGAGGGGGACCTACTTT

Function

GO: NA

KEGG:

id description
K08997 SELENOO, selO; serine/tyrosine/threonine adenylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40581 lncRNA upstream 81224 9809884 ~ 9812637 (+) True G32418
TU40474 lncRNA upstream 143591 9693269 ~ 9750270 (+) True G32321
TU40608 lncRNA downstream 11587 9917320 ~ 9920036 (+) True G32437
TU40671 lncRNA downstream 203173 10108906 ~ 10109150 (+) True G32490
TU40745 lncRNA downstream 557430 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 1472223 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 1726625 11632358 ~ 11637880 (+) True G32674
AMCG00019237 mRNA upstream 9291 9873585 ~ 9884570 (+) True AMCG00019237
AMCG00019221 mRNA upstream 69445 9813390 ~ 9824416 (+) True AMCG00019221
AMCG00019222 mRNA upstream 101267 9788361 ~ 9792594 (+) True AMCG00019222
AMCG00019227 mRNA upstream 148224 9732190 ~ 9745637 (+) True AMCG00019227
AMCG00019219 mRNA upstream 179240 9677660 ~ 9714621 (+) True AMCG00019219
AMCG00019234 mRNA downstream 34093 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019235 mRNA downstream 364886 10270619 ~ 10279108 (+) True AMCG00019235
AMCG00019238 mRNA downstream 377256 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019242 mRNA downstream 425382 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019245 mRNA downstream 742846 10648579 ~ 10658798 (+) True AMCG00019245
TU40438 other upstream 265199 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 354650 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 545042 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1509269 8345455 ~ 8384592 (+) False G32130
TU40734 other downstream 498906 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4533520 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5258615 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6138209 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10701741 20607474 ~ 20610889 (+) False G34170

Expression Profile