RNA id: AMCG00019237


Basic Information

Item Value
RNA id AMCG00019237
length 3982
RNA type mRNA
GC content 0.44
exon number 4
gene id AMCG00019237
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9873585 ~ 9884570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGAGGTCGTGGGATAGAGAAACAATGTTGGTGACTTCTCCTTGGACTCCAGGGCAGCACAATGCACTTTACTCGCTGTGCAAAACCAATTTTTGTGTTCTGGTTGAAAGACCTGAGCTGCTTCCAATAAGTTGTTTTGGCAACATGATGCCCAAGCTACCAGGGAAGAAATATTCACCACCTGCCCCCTGTGTGAGGGGGGTCTGCTGGGCTGTGTTTGTGaccgctctgtgtgtgtgtgcgtgtgtgctcTGCAGTGGCAGCAGTGGTGGCAGCGGGAGCCGGGAGAACAGTGGCAGCAGCAGTATTGGCATTCCCATCGCCGTTCCAACGCCCTCCCCGCCCACAATGGGACAAGcagcagcagttccGGGGCCAGGTCCAGGTGCAGTCCCTGGCTCTCAGTTTGGCACAATAACCCGGCAGATCTCTCGGCACAATTCCACAACCTCTTCCGTCTCTTCTGGGGGCTACAGGCGAACTCCTTCAGTCACGTCTCAGTTTTCTGTGCAGCCCCATGTTAATGGAGGGCCTGTTTATCCTCAGAACTCAAGTAAGGCTCATTGCTTTTCTCTTCTCTATGCTGCTTTCCCCACATGCAACAGATGTACACCTTGTTGAGCATTCATTATAGTTACTTAGTGCTTTATTCTGTACTTATGATGTACAATATTTATGGTTTATAATGTTCCATGAAATGCATATGTGCACACTTTCCacatgtatgtactgtatgtgaaGATGTAcaagctttttttcctttttggtttTCACTGCAGAAACACTGTAGTGCATGAAACACATTGAATGCCTACCCCACCCTTAATTAGAAAACTAgtgtttaatttcagtgcaCCACACCCTGTACTTGTTTGTTGAGTTCTGTTTTGATAATGAAACTGTTATCAGGGGCCCCATCTACGTAACTGATGGGAGGGTAGTCTGTCAGGGGGGTTGTTTGTAGGCATACATAATATTTTGGACAGGAAAAGTGCAATTTGGGTTCATTGTATTTACCATCTCAGGATGTACTTGAAAAGGGAGCAACATCCAGTAAAAGCCATCCCTATCCACACAGCAAATGAAGGCATTCATGCACTGCCTTTGTCTGCTGCCAGCTGAGTCATGAAAGAAGCAACTGCAGTCGGGTCTTTTAAAGTGATGAACAGCTATTAAATTAGACCTTCACTTTCTCTAGTCCATCTCCCCTTCAGCAGCTAAAGCAAACTGCAAAATAACAAGTTTAATCTGTTAAAATGGTGCCGGCCTTCCAACCAAGAACCATGCTGTTCCATTTTCTGTGTGTAATACAAGAGGTATTCATATAACCAATTCATATTGTAGGAAATGCTCAATATGCTGCTTCTTGCCttttgttttatagattttCCCCATTGATACTGATCTGAATAGTATTTGTTAcattgacagaaaaaaaaaatacatttccactgTAATTTGCATCAAGGGAAATGTCGGTGTGGTTTGAAGTAATTTGAAATGTAGACATTTGTGCTGGATATTTGCATGTAACAATTTTCAAATAGCAAACAATGTTCAATGTTATTGGAATTGAATGACCTTCCAGATGTAGGAGCGTAGGCCAACCCACTTTACAGAGCATTTTcttgtaaaatataatcattattttactaaaaaaaaaaaaaagcttttagcAGATTAATTTTAGTTTCCCAGTAGTTCTGTAGTCTACCCTGCAGCTTCCCACCATAACACTATAACCATGTGAAATCTATTTCACATGCATTTTACTAGTCCAGTAAGCTTGCTTGTTTTTGCTGCTGTGTGTTCAATGTTGAGTTGATGCATCACTGATCTGATATAATTTGCTATTGTAGACACTGCAGTGAGGCAGACTTAACAGGGGGTCCATTGTTCAAACCAGTTTTGGAGTACAATAAGTAGCcagtaatattacatttcttactcTCTTGGTAAAAGAACATTTCACATGAGGTATGCTCCTCAGAACTAGTTCTCCAGATCGTGACAGACTACTTCTCTAAAGCACAGCAGTACACTTCAAATGGGTTTAACCAGTTTTGCTGCATGTGGCTAGTTTAGAGGAGGTGACTGCAGTGGCAGTGAAGGCTTAGGTGGCAGCCTTTTCCTGCATTCATTTGCCATGGTCTGCTACTGGAGCTGTTGTGTGAGGAAGGTATTCTGTTGAAAGAGGAAGAGTCTCTATACGGTGTGCAGAATCAATCtttcttgaaagaaaaacaaagccgAGGCATTAGTTCCAGATGAGTGGAGGCCCCTCCTTAGGGACCAATAGGTACATCTGCTTGACATGCGGAGAATTCCTGGGCTGAGCGTCTGCAGGAACATGGTCACTCTCAAGATGCGCTCCAAAACACAGGCTGCTCAGCCTGACCGCACACCTCCCACTTCACACGTGTTTTCAATGACGCAGAGAAAGGAAAACCGAGTGGATGGGAAGCTTGTGttttgtagattttatttttgaaaaatgctAGCAGTTGCATTTAGGAAGGAATAGTGTACATCCTATTCTACAATCTCCTCAAAGTTTCTGAAAAGATGTTTACTAAGCAATCACAGAGGTACCAAAATCTGTACCACCTCAGAATTACTATTTTCACACTGTGGGGAAATTTCAATTGCATTACGCACACAACCATCTTGTGCTTTTGCTGCTAGTGTTTGGATCAGCCATCTTTCCAATTCAAAAATCAGTTTTGAACAGTACAGGCATCTACATATTCCTTCACCTATTCCTCTTTGTAGATGAATAACCTGCAAGGATTAAAGAGTAAATATGACGTGCAAACTAGATTTGTTGCACTATTATCTGTAGTCATTTACTGAAGTCTCGGAGGAAGGCACGCAGTGGCCGAGGCATTTCCTTGAACTTGGGCAGGGAGGGGATGGAAGTCCCCTGAAGTTGAATTGCGGTTTCGATCAGGAAGATTTGACCACAGGATTAACTCTCCGCTCTGTGCTCAATAGCTTGGCCCAGACCAGGATGATTGCATGCCTACTCAGTGCAATATCTTGGTCTTTCTGGAATTTGAGTAGCTGGGTGAATTAGAAATATTAAGCGAAAACGTAGGTGggacatttctattttaaatctACAACAGTCAGATTGTGCTCATTTGGACTTGAGGCAGCAAAACCCATAGGAAGTTTAGTGTGTTTTTCGGAGTGACTCCAGATCCTCAATAGAATCTCTGAACTACAGGATGTTGGCAGAAGGAGTATCCAAGTCCTCGGTTTCATTCATGTTTGCCTTTGTTCCCCGTGACTGACATCTGCTTATGTTTGTCTCCTCCCGTTTTATCCTggccctctttctccctctgtttGTGTTGCTGCTTCCAGTGTCTATcgctccccctcctccccctatGCCTCAACTGACTCCACAGATACCTCTCACAGGCTTTGTGGCCAGGGTGCAGGAAAACATTGCGGAcagccccaccccccctcctccacctcctcctgaTGACATCCCAATGTTCGATGActccccgcccccccctccacccccgcCCGTCGACTACGAGGATGAGGAGGCGGCCGTGGTGCAGTACAGCGATCCCTACGCAGATGGAGACCCTAACTGGGCCCCCAAGACCTATATTGAGAAAGTTGTTGCAATTTATGACTACGCAAAGGACAAAGATGACGAGCTGTCCTTCATGGAAGGTGCAATTATCTACATCATCAAGAAGAATGACGACGGCTGGTATGAAGGTGTCTGCAATGGAGTAACCGGCCTCTTTCCTGGAAATTATGTGGAATCCATCATGCACTATGCTGATTAAGATAGAGGGGACCTGTATTTATTCAGTCATAtctagacaaaaaaaaaagtgaattgaaCTTCAAAGCAGTTAAGTGCATTAGGATATGACAGAATGTTTGTTCcttttcaaattacaaataaaaatatctatttactatgtaacttttttttgttgttgggg

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40581 lncRNA upstream 60948 9809884 ~ 9812637 (+) True G32418
TU40474 lncRNA upstream 123315 9693269 ~ 9750270 (+) True G32321
TU40608 lncRNA downstream 32750 9917320 ~ 9920036 (+) True G32437
TU40671 lncRNA downstream 224336 10108906 ~ 10109150 (+) True G32490
TU40745 lncRNA downstream 578593 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 1493386 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 1747788 11632358 ~ 11637880 (+) True G32674
AMCG00019221 mRNA upstream 49169 9813390 ~ 9824416 (+) True AMCG00019221
AMCG00019222 mRNA upstream 80991 9788361 ~ 9792594 (+) True AMCG00019222
AMCG00019227 mRNA upstream 127948 9732190 ~ 9745637 (+) True AMCG00019227
AMCG00019219 mRNA upstream 158964 9677660 ~ 9714621 (+) True AMCG00019219
AMCG00019218 mRNA upstream 209699 9654326 ~ 9663886 (+) True AMCG00019218
AMCG00019236 mRNA downstream 9291 9893861 ~ 9905733 (+) True AMCG00019236
AMCG00019234 mRNA downstream 55256 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019235 mRNA downstream 386049 10270619 ~ 10279108 (+) True AMCG00019235
AMCG00019238 mRNA downstream 398419 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019242 mRNA downstream 446545 10331115 ~ 10403491 (+) True AMCG00019242
TU40438 other upstream 244923 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 334374 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 524766 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1488993 8345455 ~ 8384592 (+) False G32130
TU40734 other downstream 520069 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4554683 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 5279778 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 6159372 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10722904 20607474 ~ 20610889 (+) False G34170

Expression Profile