RNA id: AMCG00019242


Basic Information

Item Value
RNA id AMCG00019242
length 8846
RNA type mRNA
GC content 0.50
exon number 26
gene id AMCG00019242
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10331115 ~ 10403491 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCACCTCAGAGTGTTAGACTGCATGATCAACCACAACTGGAGTTTGATCTGCAACCTGTACTGCGCCTGGAGCACGCAGGGCACCCTAGCCCGGTCTTTGTTAGGCCCTGTGGCCAGGCGCCTTGGGAGTCTAGTGCTCACAAGGATTAAAGACAGGCTGTGGATAATGTCGGATACCGTGCTGAGTACTCTAGATTTTCCTGCCCTGTTGAAGGGGGCCAAACAGAAGGATGTACGGGAGCAGAGCGAGACCGCTTCCCCCGGTGAGGAGGAGCCCTTCTCTTGGCCTGGCCCGAAGACCCTCCGCCTGCGCAGGACCTCCCAGGGCTTTGGCTTCACGCTGCGCCACTTCATCGTCTACCCTCCCGAGTCGGCCGTCCACTCCTCTCTGAAGGATGAAGACCATGGCAACAGAGGGAGACAGCGGAACAGGCTGGAGCCCATGGACACCATCTTTGTGAAACAGGTAAAGGAAGGAGGCCCTGCCCATGGAGCTGGACTCTGCACAGgtgACAGAATTGTTAAAGTAAATGGAGAAAGTATCATTGGAAAGACTTATTCCCAAGTAATAGCTTTGATTCAGAACAGgagagagaggagagagagagtgctggaGAGGGATAGTGAGAGTGGGTACCCTTGCTGTGGATGGAAGGGAAGCTATGGAAATGACATCCACAGAGCAGTGCAGAGCTTGCTCTCGGAGGAAGCCTCTTACGAAGGTGCTGGGTTTTCTAATGGTTTGGGAAACCGGGAGAAGCAGGAGGGAGGAATAATGCATATTCTCAAGATGCATACCTTAAAGGCAATGAAGCGTACAGTGGAAATGCCCAAAACATCCCGGAACCTCCTCCTATATGTTACCCTCGAATAGACGGCAAACCCCCAGCAATGGCTCAGACCCCTGATACATCCCCTTTGGTCGAGGTGGGCCATGGCGTTCCACAGCCTGGCAGTGGCAGGGGGGCCTGGCCAGGGACCTCAGGGGGTTTGCAGCCTGACCATGGATACCGTCGAGAGATCCCTGTACCCCCCTCGCCCCCACAAGTGCCCAAGACCCagacagtagtgtgtgtgtgcaacgAGACTGTCAGGACTGTTGTTGTGCCCTCTGATGCCATAGAGAGGGGGGGGCGGGCGAGCCGAGCTGGCCCCACTCACAGAACGGAGGAGAACAGGTATGGACCCGTGGCTGCAGAACCTGCTGCTGTTAAAAGTAGGAGCAGACCCTCTGTTGTGACATCACCCACAGGTGGACAGCAGCAGTACCTTCCAGCAAGGCCAGCAGACACCCCTCCATTCCCTTCAGCTGGCAGGCCTCTTAATTACACGAGTTCTCCCGATGGTCTCCCTGTCAGACCCTCACTAACGGTGGCTGGTGATCCTTTCCCTGCGGCACCCAATCACtattctccctcttcctcctcctcctcctctacctCCCCTGCACCCCATCAGAACATTGACTGGCGGAACTACAAAACCTACAAGGAGTACATTGACAATAAACGATTGCACATGTATGGCTGCCGAACCATTCAGGAAAGGTTAGACAGCCTACGGGCCGCCTCCCAGAACTCCACCGATTACAAGCAGACGTCTCCCTCTGGGGCCCGGGGTCCGGGGTGTTCACAAGTTCGTCGAAGGAGCACGTCGCATGACCGGGCGTATCAGAACTCTGTGGGGATGCCCCTCCGCAGTGCCTCACAAGAGCGTCTTGGGGAGGCAGACCAGGCTGCACTCATGAAGGACTGGCCCCGCAGTGCATCCCAAGATGCTCTGACTTCATCGCCCTTGGGGGCCCAGAAACCACGAGCACGGTCCTGTGATTACTTGGGCAGGCAGGCCGAGACACCGCCTGGAGATGGCTTTGTTCCCGGAAGGCCTGTAGATAGGCGAGTTTATGGCAGGATTGAGGTGGAAGAAAGACCTTTACCTTACCATGATGGGGCCTGGCTGCCTAACAGGCAGTCCATCCCAGTATTGACTGTTCACCAGTCCCACAGAACTCCAAGTGGTTACAGCCCTGAGAGCCGCATGGGTTGTGGCAGTTTCCGTGGTATTCCTGCGGCCCCTCAGTTCCCAAAAGGTACAGAACCATTGCACATGTCTCGAGTTGAAAACCTGCCTCACGCTGTCCCCGTTTCTGTGGACAGACCCTCACGTGTGACAGAGAAAAACTCTGTGGTGGACCCTTCGTATGTTGCATCACCTTTGACCTCCGGTGAGAGGTCCAGCAGCTCAGATGCACTGAGAGACCAAAGAGCAGTCATGAGTAACCACCTGCCCCACACTGTTCAGCACTTGCAGCCCCGGGTGAGAGCTGAGAGTCTGCAGGACCAAGGAAAGGAGCAGGGGATCAACACCAGGTCTTCCTCTTGCTCCTCAGTTTCCTTTAAGACCGCGGCACAGCTGCCAGCCAGCAAGAGCACTCAGAAACAGCAGAGCCCAGCTACCTCCTCCAGCAACGGCACAGCGTCCTTCAGAGGGAAGAGCAGGGAGTCCTCAGGGAAGGTCAACGGGAAGGAACCCACGCAGAGCGAAGGCACTGATGCAGCAGGAGTCCAGACCGTGGTACTGAGAGAGAAGCCCCCCTCGGGGAGGCCCACTCCTCAGCCCCTGCGGCACCCGTCTTACATCCTGGCAGTGAACGAGCCCGAGAGCGAGCCTGTACCCGATTCCACCTGCTGGCTGCCCAACGATGCCCGACGGGAGGTCAACATCATGCGTCTCGGGGAGCACCGCAGAGATTCGTGCTCCAGCCCTCACGACGACTCCCTGGCTTCCATCCCCTTCATAGATGAGCCCTCTAGCCCAAGCGTTGACCATGACGTTACACACATTCCAGCTTCTGCTGTGATTTCTGTCGCACCAGCCATAGCTACAATCCCCCCCAGCCCAACCTCCCCATCTCCTGTCATTCGGCGCCAGCTGTCCCATGACCAAGATTCTCTAAGAATAAGTATTCTGGAATCACAGTCTGCTTCCAAAACCGAACGGTCAAAGTCATATGATGAAGGACTGGATAATTACAGAGAAGAAGGAATATCAAGGTCATCCATTAAACATGTGTCCAGTCTGAAGGGACTGAAAAAGGCTGTTGATGGTCAAAAGTCTTCTGAAGATTCGGGATCCAGGAGAGACTCGTCCTCCGATGTTTTCAGCGATGCCACGAAAGAGGGATGGCTTCATTTCCGGCAGCTCTCCACTGACAAGAGCAAGCGTGTGGGAGGTGGTATCCGTCCATGGAAGCAGATGTACGCGGTGCTGCGAGGCCACTCTCTGTGCCTCTACAAGGACAAGAAGGACGGGCTGGCCCATGGCTCGGCCCAGTCCGAGgatgagcagcagcagccgaTCAGCATCAAGGCCTGCCTCATCGACATCTCCTACAGCGACACCAAACGCAAGAACGTGCTCCGGCTCACCACCTCTGACTGCGAATACCTCTTCCAGGCTGAGGACAGGGAGGACATGCTGTCCTGGATCAGGGTGATTCAGGAGAACAGCAACTTGGACGAAGAGaacgCGGGTGTTACGAGCAGAGACCTAATAAGCAGGAAGATCAAGGAGTACAACACCATGATGAGCTCCCCGAGCGGCAAAACGGAGCCGTCTCCGAAGCCCTCCCGCCAGTCCCTCAGCATTCGACAAACCTTCCTGGGAGGGAAGGGGGAGCAGAAAGCCCTGAGTCCTCACTCTCCAAAGCAGGAGTCGGAAAGAAAAACTCCCCATAAAGACGATACTAGTCCACCAAAGGATAAAGGCCCTTGGCGGAAAGGCATTCCAGGGTTCAGGAAACCCTTCGAGAAGAAGCCCTCTCCGGGGGTGACTTTTGGGGTCCGGCTGGATGACTGCCCTCCGGCTCAGACGAACAGAtttgtgCCCTTGATCGTGGAGATCTGCTGTAAGCTGGTGGAGGAGAGAGGTCTGGAATACACCGGCATCTACAGGGTCCCGGGGAACAACGCTGCCATTTCCAACATGCAGGAGGAGCTAAACAACAAGGGGATGAATGACATTGATGTCCAGGATGACAAATGGCGGGATCTTAATGTGATCAGCAGCTTGTTAAAATCTTTCTTCAGAAAACTTCCAGAACCTCTCTTCACAAATGaaaaatatggTGATTTTATTGATGCCAACAGAACTGAAGATGCAGTGGAAAGATTAAAAATACTCAAAAGACTGCTTCATGAGCTACCCGAGCATCATTTTGAAACCCTGAAGTTCCTCTCTGCACATCTCAAGACCGTGGCTGATAACTCTGAAAAAAATAAGATGGAGCCCCGCAATCTGGCCATCGTGTTCGGACCCACCCTGGTCAGGACGTCCGAGGACAACATGACGCACATGGTGACGCACATGCCAGACCAGTACAAAATCGTAGAGACCCTGATACAACACTATGATTGGTTCTTCACAGAAGAAGGCAACGAAGACCCCCTGACCCCAGTGCGTCAGGTGAACGCAGTTGAGTCCCAGCCAGTACCAAACATAGATCATTTGCTCACCAACATCGGGAGGACTGGCACTTCTCCTGGAGATGTATCAGATTCAACCAATAGTGATTCTGCCAAATCTAAGGGTTCTTGGGGATCTGGAAAGGATCAATACAGCAGAGAGCTGCTAGTATCCTCCATCTTTGCTGCTGCAAGCCGTAAACGAAAGAAACCGAAGGAGAAGCCGCAGCCGAGCAGCTCTGAAGACGAACTGGACGCGGTCTTCCTGAAGAAAGATCTGAACCATGAGGCGAAGTGGCCTCCGGACGGCAAAGGGGAGGTGGAGAAAGAGACCGACCAAAAAGTGTGGTTAAGGGATAGTCAGGAGGGTAAAAAGGACAAGAGTAAGAGCTTTGACTTGACTAAGGCCAGAAAGGATCACAGGAATTCAGTTTTCCTGAAGGAGAGGGTATCCTCTGCACAGCCTTCCCCTACCCCTTCACCAAGCCCAAAGCGCACGAGCTCGCCGAGCCTCAGTTACCGCATGCAGCCGGCAGGAAAATCTTCCCTCTCCGACCCCCCGTCACAGTTTGATGATGCTGTGTCAGATTTAGGAACGATGAACAGCACAAGTTCTCAGACCTCCATGCACAGGACGTGCCACAAGAAATGGACGACCCCTGACATCAAAGGCAACGAGTCCGCAGCGGCAGAGGTCAGCTCCATCACCTCCGATTACTCCACCACCTCGTCTATGACTTACCTGACCGGCGTGGAGTCCAGCATGCTGAGCCCAGAGGTCCAGTCGGTCGCAGAAAGCAAAGGCGACGAGGCAGACGACGAACGCAGCGAACTGATCAGTGAGGGCCGGCCAATGGAGACAGACAGCGAGAGCGACTTCTCCGTCTTCGCCTCCAGTTCAGCGCCGGAGAGGACGCTGCGCGAGTGCCTCCAGGAAAAAACCCGGCAGAGTCGTAGAGGGTCCAACGGCAGCGAGTACATGGGCACCGAGGGGAGCAGCACACCCAAGCTCGAAGGCCGGCGCCTGTTCCCGTCTCACAAGCTGATCGAGTGCGACACGCTGTCGAGGAAGAAATCGTTGCGGCAGAAAACCGACAGCGAGTCTTCGGCCGAGGGACGCAGCGATAAAGAGTCAAACCGGTTTTCTCGGGTCTTGGAGGTCATGAAGAAAGGAAAATCGACGGGGAGCTTGAGCTCATCAACCAAGAGCGAGTCCGAGAAGCAAGAGCCGGCATGGAGGCTGAAGATCACCGAACGGTTAAAGTTTCGTCTGAAGACGTCCGCGGATGACATGTTTGGCGTTGGCTCCCAAAAAACCAGGTCTCCAGAGACGCGCAAGAAGAAGAACATCCGGCGCAGACACACCATGGGGGGACAGCGGGACTTTGCCGAGTTGGCCGTCATGAACGACTGGGAACGACAGCAGGCGCTGGGGGGGCCGCAGTCGGAGCTGTCTGCTGTGGACCGCCTGAAGCCCAAGTGCAACTCCCAGGACTTTTCCATCAGAGAATGGATTGCTCGAGAGCGTGGCCGAACTAGCAACCCCGAAGTGAACATAGACTCGGCCAAGGAGCCGCTGGCCACGGCCGCAGACAAAGGAGACAAGTCGGCATCATCTGTATCTGTTCAGCACGGTGCCGAGAGCTCCAGCAACCCCACCCCGATGAACAggccctccccctcggcctcgcCCGGTCCTCAGTCGGCGGAACAAGTGAACGGAGACAGCCTccagaacaagaacaaaacaaatctgagcCTGGCAGTGGACGCACACCCTCATAAACTGTCTGGCACCCAAGTTGTGAGGTCCAGATTCTATCAGTATCTGTAAAATGGcaaggtttgtgtgtgttgtgtgtgcgtgaaagtacatgcacatatatacatatgtacttatgtatgtgtgtgtgcatatatatatatatatatgtatacactggCAGTCAAAATTATTAGGAAAGCTGGAAAGTTCACTGAAATGTAACTATGAAAGGAATAAACGTCATTTCATATTAACTTATGTAAACATGAATTACTTCTTCAGCGGAAAACTCAAGAGGATGTGTCTAGCTGGCCCCTCTCTCCTGGATACTACCCCCCCCCTCTACATACGTGTGTTAGCCATCACAGCTGCACATGGACACTTTGGCACAAATTAAGTTGTGTATTGgcctttctatttttttgtgtgtatgtatgctgGTTGCACCCCCCCCCACGCACTTCAGTCAAACACAGCCCAGAACATTTGAGCAGCGTTAAGGTCAGGCGACTGGGGAGGTCAGTGCATGAATTTCAAAACCTGGAATTTCAAAGATGTAGTTTTAATCTGGCTTGTGTTTAGGGTCGTTACATCGTCAAGTCAAAACCTTCAGCCTCATCTTGTCTTCCTCAGTCATGTAGGATGCTGAATAGAATTGTATTGTTGCtttataaatgtgctgtttaCTGTTAGTGCACTGGGACATCAACCCGAACCCTCACATCACCACCTCCAGGGTTACTGTAGACACTGCAGACCGTATGACCATGTTTCATCGCACATAAGGTTTCTGCTTGAAGTGGAAGTTGTCTTCATCATTTTCTCACTCTTTCTAGTCTGTTGTCCATTCCGTGTGTACAGGTCCGTTTCTTCAACTGAAAACATCTGCTTGAGCTGCAGCTCTTCCCATCAGAACCACTTTCTTTCATGTAGCAAGATTCGGTGTGGGATTGAAATAAGTGTAAGGATAAGACATTGGCCATGAACTTTAAAGAAATCAGGCAACTCTTCgatcttatttttcttgtgaCACTTTTGTTTACTTGGCTACCAGCTTTCCTGTCTGTTAATGTGGTCTGTACTCTAACAGGCACAACATGGACTTCCCACAGCACCCCATACAATACCCTCCCGCCGATGACATTATGAGCATTAGATAGTGGAAGGAAAGATCGTTGGAGTCTTAACTAGTGCATCCTGTGTAGTGCGATTTAATGGAAGTAACGGATATAAAATGTCCTCAATGTATCcggttaattttttttttttgtgtgaataatAAACTTTTGTGTAAATTTATACATTATACTTTTCTTAGTGGATTTCAGTGAAATTGGCAAATATCCCCAcattgtgtgcctgtgtgtgtgtgtgtgtttgtttgtgtgtgtatatatatctatatatagatatgtagaCATAGTTAGTTACTGCACACTTTTCTTTAATGTTATAATGAACGTAACTGGATTAAATCCTGAATTTTCCTGTAACATCTCATTTGAATCGACGTGATTGTGTTTTCAGACAGATGTGAGATTGACCCAGTTTCTCTTAGTCAAACCCCAGTTCAACTGGAAGATAGCAAGGGCTTCAGTCATAGGGTATTTGTGTGTACATTTCTTACATTCATTACTTTCACAAACGTCGGTCATTCGAAATGACACTaaacaatacttaaagaaaattaaattgcagACTGTAAAGTCTTAAGTATTACTGAAGATTTTGTATGCTAATATATTATTGAAGTACTGCATTTTTtaggaagcaaaacaaatacgGTCCATTCTTCCGACAGTAACCCTATGAAGAATGTATATGCTTGCTATTGTATTGACTAAAGCTAGTTGCTTgtaataattcttatttttaaactgtaaatatgttTCTCTGTACttgaactgcattttatttttgttcagccTGCGTATGGGCTGGTTTCTGTGCTGGGTACTGTGGAAACTCTTTGCAGTGCATTGTAACAGCCAGACAGTCTGTGCtagtaatataaaaataatacatgtttttatatgactttaaatgacaaaatgagTACTGAACAACACTTCTGATGCAATATcctctgtattgtattgtggtTGTATTACCATTGCTTTGTCAGTTTCTGGCAtcagaatgcaaaaaaaagaagaaaaaaatcaaatcttAAATCATGTTTATTCACGAAAGAAAGTGCCTCATATTGAATTGGTTCTGGGTTAGTTAGGGTGCCATATTGtctttgttaaatatatgaaaatgtactgtGAATGATTGAATTTTATCTACAACccattaaataattttacagattccaaCACAGGCAGATTCCGAGCTTCCATTCTTTAGGCATTCCAGTTGGGTcttaaagtgttttatatcttcaaaattttaataccttttagtttctttctttttttttttttatgggacttgaattttaaatatttctgtaaaataagtaacttaaatgtgtatatatatatatatttcatgttaggcttttttttttattttcttcaaatgccAGATTTGATAAGTGTTGTAACATAGGCATGTAGATAGTGGACCCTGGCAAAACTGgtcagttgatttttttttttttttttt

Function

GO: NA

KEGG:

id description
K20315 ARHGAP21_23; Rho GTPase-activating protein 21/23

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40671 lncRNA upstream 221965 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 411079 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 518478 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 580845 9742247 ~ 9750270 (+) False G32321
TU40482 lncRNA upstream 604362 9719039 ~ 9726753 (+) True G32325
TU40745 lncRNA downstream 59672 10463163 ~ 10508063 (+) True G32549
TU40925 lncRNA downstream 974465 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 1228867 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 1228867 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 1597472 12000963 ~ 12001164 (+) True G32778
AMCG00019238 mRNA upstream 26291 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019235 mRNA upstream 52007 10270619 ~ 10279108 (+) True AMCG00019235
AMCG00019234 mRNA upstream 384069 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019236 mRNA upstream 425382 9893861 ~ 9905733 (+) True AMCG00019236
AMCG00019237 mRNA upstream 446545 9873585 ~ 9884570 (+) True AMCG00019237
AMCG00019245 mRNA downstream 245088 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019248 mRNA downstream 297785 10701276 ~ 10709432 (+) True AMCG00019248
AMCG00019254 mRNA downstream 674480 11077971 ~ 11087695 (+) True AMCG00019254
AMCG00019255 mRNA downstream 864517 11268008 ~ 11280932 (+) True AMCG00019255
AMCG00019259 mRNA downstream 949728 11353219 ~ 11354106 (+) True AMCG00019259
TU40438 other upstream 702453 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 791904 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 982296 9329479 ~ 9348819 (+) True AMCG00019215
TU40197 other upstream 1946523 8345455 ~ 8384592 (+) False G32130
TU40734 other downstream 1148 10404639 ~ 10409497 (+) True G32539
TU41554 other downstream 4035762 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 4760857 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 5640451 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 10203983 20607474 ~ 20610889 (+) False G34170

Expression Profile