RNA id: AMCG00019248


Basic Information

Item Value
RNA id AMCG00019248
length 1868
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00019248
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10701276 ~ 10709432 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGATCTTCATTACCTAAACTCGGAGTCTGCCAAAACCGCAGGAAACCCGTGCCGAGACCATTGCACCTTGTGGATTTGCCGTCTGCTGTGGCCGGAGGAGAAGAACGGCGGCTTTGGAATACAGAACTCGCGAATCTACACCGCGGTCGTAGCGAGCAGGCGCGTCGTGCACCGAGATGAAAGCCAAGAAGGCGAGACGGAGGATGAAGACAGTATGGACGCTCCACTTGACTTGTCCTCAAGCACAGGAAGTGGCAAGAGAAAAAGGCGTGGAAATCTTCCCAAAGAATCAGTGCAAATCCTGAGAGACTGGCTTTATGAACACCGATATAATGCATATCCTTCAGAACAGGAGAAAGCACTTCTTTCCAAGCAAACTCATCTCTCAACACTACAAgtcTGTAACTGGTTCATCAATGCCCGCCGAAGGCTCCTTCCAGAAATGTTACGGAAAGATGGAAAAGACCCCAACCAGTTCACCATCTCGCGAAGAGGGAGTAAGATTTGTGAGGCAAATCTCACAGAAGGCTCCCCAGTCCCCAAGTCTCACGTTTCAGAAAACTCAGACAAGAGGTCTCTCCACCCTTCGAGCTTGGAACCGGGCCTGCCGAGGAAACCTGTGTCACCAAAGACGCCCGCTTCAGGGCCGGTGCTCCCCAGGCCGTCAGTAATATGTCACACTACCATCACCGCAATGCAGGGCAGTCCTCTGCACTACTGTCAAACCATCACCATGGACAAAGACATGGATCTGCATTCCTCAGTGGCTCCCAGTCTGTACAAATGTCAGGATGAAGCGGCAACAGAAGGTAACTCAAGCCCTCAGAGTGGGCTGTTCAACActcctccccccaccccgccaGACCTCACACAGGACTTCAGCGGATTTCAGCTCCTGGTGGATGTTGCACTGAAACGGGCCGCGGAGATGGAACTGCAGGCCAAAAAACTTGTTTCTTAAACAACTGGATTGTCCAAAACGACTTAACTGCTGAATGACCACGCTaagtaagaaaagaaaagcctgatcatttatattttctggTGGATAAATCAAATGCTATGGTAAGGACTTAATGAACATGTGTTGTGGTGCcttgtttaaattttttttttttttttgcacaccGAGGACCAAAAAACAAGGCTGGCTGCAACTTTCTCAAAGGTTCCTTTTAAAGAGGAATTTATTGGCTACTTTAGGTAGAGTTTGCTTATTGTTTCTTATAAAATCAAGACTCGGTTGGgttcttcattttcagttttcttttttttaaccagtttgAAAAATGTCTGCCTTGTTCATTTGCACATTAGGGACCAAAAACGGTCATCTGtcttaatgtacattttctttttggcaTAAACAATGAGCTTAATCACTACTGTAGTCAAAGAGGTTCTTTTGTTTcatgttaaacattttgtttttgtttttttaagtttggaaAGTGAAAGGTCatttttgttcaattatttgattttcatattgaCATGAGGGGCATTTAAAATTGGTTATGTAGCAATTTCACATCTGTCTGAGCCTTCTTACTGAGTAGAAGTGGCTAGTAAGTTTGCCAATAGAAAAAGTCCCCAGAAGGTGCCTTAGATCAGGTTAATGACACCTTTATTGTATGCCATAAGGagcaaactggaaaaataacactaaatatGTTGGTTAGGGTAAGTGAtgatatatctgtatatatcactgagaaaatgtcattacattgttttgaagCAAACTGAATTATAGAATGCTGTGTATAAATAATGTGAGGAGATGCCCAATGATGTGATTTCTTACTTTCATACTGTGCAATGTCTGTGGCAAACTTCGGTCACAtgctgtttaaataaagt

Function

GO:

id name namespace
GO:0021797 forebrain anterior/posterior pattern specification biological_process
GO:0072091 regulation of stem cell proliferation biological_process
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0048854 brain morphogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K19383 TGIF1; homeobox protein TGIF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40745 lncRNA upstream 193213 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 592126 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 781240 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 888639 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 951006 9742247 ~ 9750270 (+) False G32321
TU40925 lncRNA downstream 668524 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 922926 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 922926 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 1291531 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 1899969 12609401 ~ 12612533 (+) True G32892
AMCG00019245 mRNA upstream 42478 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019242 mRNA upstream 297785 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019238 mRNA upstream 396452 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019235 mRNA upstream 422168 10270619 ~ 10279108 (+) True AMCG00019235
AMCG00019234 mRNA upstream 754230 9939826 ~ 9947046 (+) True AMCG00019234
AMCG00019254 mRNA downstream 368539 11077971 ~ 11087695 (+) True AMCG00019254
AMCG00019255 mRNA downstream 558576 11268008 ~ 11280932 (+) True AMCG00019255
AMCG00019259 mRNA downstream 643787 11353219 ~ 11354106 (+) True AMCG00019259
AMCG00019261 mRNA downstream 762690 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019262 mRNA downstream 815767 11525199 ~ 11535371 (+) True AMCG00019262
TU40734 other upstream 291779 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1072614 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 1162065 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 1352457 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 2316684 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 3729821 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 4454916 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 5334510 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 9898042 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 9898042 20607474 ~ 20610889 (+) True G34170

Expression Profile