RNA id: AMCG00019254


Basic Information

Item Value
RNA id AMCG00019254
length 2452
RNA type mRNA
GC content 0.38
exon number 5
gene id AMCG00019254
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11077971 ~ 11087695 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atGTTTCAAGTTCAGCACAATGGCGATCAGAAGCCCAAATGCAGAAGAAGGAGACACCgaaggagagggaaagagaccTGCagcgagagagaaaaggaaatgaagCCCCGAATACAGAGGCCCAATTACTTTGTCGCCATTCCAGTTACAAACAAACGGATTTTGGAAAAAATTGGAAAAATTCAGAATGCTATGATTTCGAAGGAGAAAATGCTTCGCAGTGCAGTCATTCCTTTGGAGAAAGTGCACCTCACAGTCATTGTAGCTAACCTGAAAAATGAAGACATGataaaaagGGCAGCAGATGCGTTACAGCAATGCAGGAAAAAACTGGATGAGATCTTGCAGGGTAGATGGCCCCAGATGGCATTTTGTGGAATTGACCAGTTTGACAATAAAGTGGTGTATATCAAAATGACAGAGGTAGAGCAGCCAATACTCTGTCACATGGCAGAGATTATAAGGCAACATTTTGAAGATATGGGGCTTGATATTACTGGCAGCAAAGAGTTTAAACCTCATCTGACTATTCTGAAGTTGTCCAGAGCACCAGCACTGAGACGCATGAGGCTAAAGGCAATTATATACAAAGAATATGAAGACTTCTCTTTCGGTGTCCAGACATTCACTCGGATTGATCTCTGTGCCATGAGAAAGACGCAAGCCTCTGGTTACTACCAGTGTGAAAGTTCACTTGTCTGGGGTTCTTCTGAGGCAAGTGTCGGGGAATTGACCTCTTGTTCAGAAGTGACTATGGTGACCTCCGAGTCTGTTGCCTGTGTTGGTGAAACTCAAGATTGCAGTTCTGATCAGGACCAGCCGCTCAGTTCCCTCCGTGTCACATCTTGTGCAGAACAGGATTCTGTCCATGGGTCAGTTCTCAAGGAAACTGTGAATAGCAGACATGCCTCGGCTGCTGATCTTGGGAGAGATATTGATGACAAGGTGCATGGAGAGTCCACGGGGATCAGCACCAAACCTGAGGACCTGGAGAGAGCTTGTGCAAAGACCACAGATTAGTGTCGGTGAAGGAAGTCCTCCCTAgcggaaaaagaaaaactttcaAGAGTATGTctgatttataattaaaataatcataattataatgattattattatactcttgatttaataaagtaaatattagtTGCATCTGATGAGGGTACAAGAACcctttttgatttaaaaaggaagactttttattttttaggtaaATATGAAGGATAATTTAATCGGTCATTAATAGACCCCATTCTGTGCccctctttatttatttttttgaatggaTAGTTAAGTTTAAACGAGAACTAGCTATTAatgttttagtaaaataaatcatCCTTTGGAGGGACAATTTCATTTTCTATGTGTAGCTTTAAGAAGGGTGGGATGTCATTGAAGTTTGGCTGTaacctgttttgtttgactTCTTTATTTGTCACAGTTATAAAACTTTTCTCAAGCATGCCTTAAAGTaagcgtgtatgtgtgtgtgtgcgcacctGCACTGAAAAAGTTTCACGCTGAAGCATTATAGGACCTGCTAATTGTACAATTAGTTCTAgctctttcatgtttttaattaattttccgTTTATTTTAAACCAGATGAAATGTCAGTCCTATTTAAGATCTTCCATTCCTCAGAGTAAAGCTGATACAATACTGTGAAAGCACTGGCACTCCTCTTTAGCAATAGTGGACTGTGACGGTTAACAAAGCTGACAGAAGGTTCTAGACATTCTTGAAAACTACTGAAATAGATGATAAATGGAGATGCTAGATGTTTgctcttttaattttattcaggCTTCTGAgcagatattttattatgttcGTGTGGCTGAAGTTCGCTTGGAGAAAATCTGTTTgtaaaagcaaatcaaattcCAGCATCATTCAGTTTGagctgaattaatgaattaacagCCCAAATCAAATAATTCAAGAGCTCAAATTcagcaaattattaaatgtgtgctATTTAATCTGTCAATGAAGAAGCACAATCCTTTGTAACATGATTTTTCCCCCACCAGCATTAGATACATTATTTGAGAAAATGATTGCCTTAATCTAgcaacatgtattttgtatgaatagtatttaaataaacaaggaaTTATATTTCTTAGACAGGAATTATTTTCTCAAACGGGACTTGACATAAATTAGCAGCCTCTAAAGCAGTCGTGGGCAACCTCTGGTAATGTGTGGGATACATTTAATGAGCCACACTTCCCTGAAGCATCTTCACAGATTGCAGATCTAATGTGTATTAGTTTGAAAATAccccttttttttaatttctagaAAAATGGAATACACACTAAGCTTAAAATGTTGCAAATGCTCTTCACTGGAAGCAATAAAACTCAGGGAAACTAATGATGTCATGGTTTTTGGATTGATAACCAGCCTACACATTTAATCCCTGAGGGCAGCAAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40745 lncRNA upstream 569908 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 968821 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 1157935 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 1265334 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 1327701 9742247 ~ 9750270 (+) False G32321
TU40925 lncRNA downstream 290261 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 544663 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 544663 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 913268 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 1521706 12609401 ~ 12612533 (+) True G32892
AMCG00019248 mRNA upstream 368539 10701276 ~ 10709432 (+) True AMCG00019248
AMCG00019245 mRNA upstream 419173 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019242 mRNA upstream 674480 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019238 mRNA upstream 773147 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019235 mRNA upstream 798863 10270619 ~ 10279108 (+) True AMCG00019235
AMCG00019255 mRNA downstream 180313 11268008 ~ 11280932 (+) True AMCG00019255
AMCG00019259 mRNA downstream 265524 11353219 ~ 11354106 (+) True AMCG00019259
AMCG00019261 mRNA downstream 384427 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019262 mRNA downstream 437504 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019264 mRNA downstream 466525 11554220 ~ 11567397 (+) True AMCG00019264
TU40734 other upstream 668474 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1449309 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 1538760 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 1729152 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 2693379 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 3351558 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 4076653 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4956247 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 9519779 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 9519779 20607474 ~ 20610889 (+) True G34170

Expression Profile