RNA id: AMCG00019255


Basic Information

Item Value
RNA id AMCG00019255
length 3418
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00019255
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11268008 ~ 11280932 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTTTCACAGGAAGGTGCTCTACCAGGGGATTAGCAGAATGATTTCCCAGGACTCTCTGCACCCACCTTCCATCAACCGGTCTATATCACAGGACTCCCTGGACAGCAACTCGATGGAGGATTACTGGAGTGAAGTCAAGAGCATTGAGGAGAACTGTGAAGATGGGCAGGAGGAAATgctggaggccaagtcaactgATGAGGgggagctgcaggaggcctgGCTGCAGGAAGCCGGGCTGTCCACGCTAGTGTCAGGGTCGCCAGGTGATGGACCAGCCGAGGCCATCTTCTCCACGCTCACTCGCGCTCAGGCCGCCACTGTGAAGAAGCGCATTGACAACTACACACAGACCATGCGCAAGAAGAACAAGCAGTCCGTTCGGGATGTCCGGGATATCTTTGCAAGTGGCGACACACCGCCTGTATTCTGTCCTGAACCCGTTTTGCCAAGTCCTTCCAACAGCATCGCCCATCCAGCCAAGCTGCCTTTCCGCACACCAGGAAGAGTGGAAAACTGTGTGTCAGAATGTCAGATGGGCAGAGAGCGACCGGCGCTGGTGGAGGAGCTGAACTTCAACGTGCCCTACTCGGAGGCTACCGCCTGCCGACGGAGAGAACGAGACGCCAAGCAATtcctgaaaataaagaaagatgaTGCAGCACTGCCTaaatttaACATTCTTCCCACTAAAATGGGACGGACTAGGGTCGGAGATCTGTCACCAGAAGATATGAAGAAGATTGGTTATATCTCCCTTATTGAGTTAACTGCTTATTATGACGCCCTTGGAATTGAGCTGAAAAGAAACCGAACAGTGCGGAATAAAGTACGAGAAAGTGGTCTCTTTGGGGTTCCCCTCACAACGCTGCTAGAAAATGACCAAAAAAAGGCCCCTGGATCCAAAGTCCCTCTTGTCTTCAGAAAGCTGCTGGCAAAGCTGGAGCAGACAGGACTGCAGACAGAGGGAATTCTCCGGGTGCCCGGATCGGCATCGAGGGTCAAGCAACTCCGTCAGGAACTGGAAGCAAAGTTTTATGAAGACACGTTTGACTGGGATCAAGTGAGACACAACGACGCTGCTGGCCTGCTGAAAATGTTTATCAGAGAGCTCCCACATCCTCTGTTAACTATGCAACACCTCCCGGCTTTTGCTGCAGTAGAAAatatctctccATCCAAGATGCAGCTTCAAGCCTTACACCTCCTTATCATGTTGCTGCCTGAGCCTAACAGAGACACACTTAAGGCGCTGTTGGAGTTCCTCATAAAAGTGGTGGCCAATGAGGAGAAGAACAGGATGAGCTTGTGGAACGTGTCTATGATTGTGGCTCCTAACCTGTTCATGTGCAGAGGCAAGACCGCCAAGCCACAGGAGATGCAGGGGGCTGCCGGTGCTGCCCATCTGGTGCGACTCCTCATTAAGTACCAGGACCTGCTCTGGATTGTCCCCTGTTTTATGATCTCTCAGGTGAGAAAAATGAATGACGCTGCCGTGAACAAGAAGCACCAGGGCTCGGACAAAAATAAACGGAAACTCCTGAGAAGGTGGAATGCAGAACGAGAGAAATCAGAGAGAAATGAGCTCTCTGACATCCGTGAGGGAGTGATACGGGTTCACGCTCCGCTGCACGCCAAGGTTTCCATGGCGATCTTGCTCGACAGCGAGACGAAAGCGAGGGATGTCATGGCTCGCTTTGAGTGTGATAATAGTAATGCCTCCCGCAGCTCCATCAGATGGCAGAAACAGTATCTTTATGAAGTGGGTGGGAATATAGGAGAGCGATGTTTGGACCCTGAGGCCTACCTTCTAGACTTACACAGAGTGAATCCCAACTGTGAATGGGTTTTTAAACCAAGAACATGAACCTCCAGAAAGGACAAGGCAGACTGGATACTTGCCCatactgccccctgctggatATACCTACACATTGACTTGCTGGTGGCTTTGAGGAAGGAAGCACAGTTCATCAGATGTTTGCCGAGTTGACCACTGTGATCCACCTGTTCACAGACCCCTCAATGCCATAGACAGGTGGGTCTGCAACCACTTAGTATTTGAAGAACCTGTGGCACTGACTTGTGATTCGCTTTACTTTGAGCCTTATCCAGAAGACAAGTATTTAAAGGGTGCCACCACTTGTAAGCCTTTGGATTTAAAAAAGGGCTTGAATTCAGCCTCCTTGGTAgggaggatttatttttatttttatttttatcaggaTGAATCGTACAATTCTATCGCCAACAAAACCTGCAGAACTGTCCATCAGGTTTGGTTTGTGCCAAACTCAAAAGCCAAACCTGCTTGAGATTTCCTCTGGATAACAAGGGACTCCTGGGGCCGCGCTCACATAGAACCTCTCCCGCTCGAAACGCAGATgaagtacaaatgtaaaaatgtacatacaatatttatacCACTAATTTATcccactttttatattttatcatgAGCTGCAAGtcctaagatttttttttaaagcatgtttaTTGTAAATACCATTCAAAGGGATTTGCAGACAATTGTGAAGCAGTTACTGACGTGGATTTTAGACTTGCCTCAAAGGATGCCCAGTGGTAACGGCTGTTTCTGGCTCACCGGTCTATGGAGCTCTAAACACAAtgttaacaaacacacaaagaagatGTCTTAATCAAACATTCGAGTGGCAACACTGACAGTAGTTTTGAGGACTTGTCTAAACATGACAGTTGTAAAGATGGAAGGAGCTGTGACTGACAGAAACATCTATGAAGGTAATTAGGTAAACAAATGCTTGAAATTAACTTCAAAGAAGAAAGTATAGAAACAAGTAGCCAGAATTAAGATTTTTAAGTGGTCAAAAACAGCCTTTAAGATGGGTatcatgtgtgagtgtgtttgagGATATGAAAGAATATATACACAACAGTTGTTGCTGACCTTGTGAGTGAGATTTGTGGTTTCTCTCTTGTCTGTCTTTTATAATCCTTGATAACCAACAGGCTGTCTGTAAAAGTACTGACATAGCATGTATTATTGCACTGCAGTGCTGCATTTGTCATTCTCAAATATCATGGAGCAGTTCCGTTAGCAATGTATGATGAACTCCAAGACGTCCGCTTTTATATTTTCCTGAAATGGAGTGGCTGGAAATGGAATTGGATTTGTTTGCTTCAGTCAAAGCCCGACTGTGAGAAGAGACCTACATGTTCTAAGTGCTATAGTGCAAACTTACAGGTCACATTTCTgtatgatgttttttgttttgtttttctcctgtaTGTTTGACACTGCCAGCAGTTATCTGTATCTTCTGTTTAGGCATAGTAGCCTTGATTTGTGTACACTACAACACTAAAGTACTGTGATGTTATGTTGCCGACTTGTCAAGGATTTGAAATGAATAGACCTGACATCAATGAACCAA

Function

GO: NA

KEGG:

id description
K20639 ARHGAP18_28_40; Rho GTPase-activating protein 18/28/40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40745 lncRNA upstream 759945 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1158858 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 1347972 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 1455371 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 1517738 9742247 ~ 9750270 (+) False G32321
TU40925 lncRNA downstream 97024 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 351426 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 351426 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 720031 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 1328469 12609401 ~ 12612533 (+) True G32892
AMCG00019254 mRNA upstream 180313 11077971 ~ 11087695 (+) True AMCG00019254
AMCG00019248 mRNA upstream 558576 10701276 ~ 10709432 (+) True AMCG00019248
AMCG00019245 mRNA upstream 609210 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019242 mRNA upstream 864517 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019238 mRNA upstream 963184 10282989 ~ 10304824 (+) True AMCG00019238
AMCG00019259 mRNA downstream 72287 11353219 ~ 11354106 (+) True AMCG00019259
AMCG00019261 mRNA downstream 191190 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019262 mRNA downstream 244267 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019264 mRNA downstream 273288 11554220 ~ 11567397 (+) True AMCG00019264
AMCG00019263 mRNA downstream 304861 11585793 ~ 11599813 (+) True AMCG00019263
TU40734 other upstream 858511 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1639346 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 1728797 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 1919189 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 2883416 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 3158321 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3883416 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4763010 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 9326542 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 9326542 20607474 ~ 20610889 (+) True G34170

Expression Profile