RNA id: AMCG00019259



Basic Information


Item Value
RNA id AMCG00019259
length 888
RNA type mRNA
GC content 0.48
exon number 1
gene id AMCG00019259
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11353219 ~ 11354106 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGGCTAAGCAATCGAAAGACTTTGCAAAAGAGGAGCTGAAGAAACAAGTTAAAAAGACTGGGAGGGCTGCAGCTAAAGAGAACAATTTGTCATCAGCTGAAAGGATTCGGAAGCATACCACCACCCATTTTGGATTCACCATTCTGACCTTGGCCATGCGGGGAATGTCTGAGATGCCTGAGGAGTTGTGGGAGCTGACTGAGTTGGAGAAGCTTAACCTGTCACTGAACTGCCTTAGTGTCCTGCCCCCTGCTGTGGGAGGCCTTGAAAATCTAGTGGTTTTGAATCTGTGGGGAAACCagctggccagcctgcctgtgGAGATTGGCCTGCTGAAAAACCTGCGTGTCTTATTTGCCTACAAAAACCTCCTGACTGAGGTTCCCGAGGAGCTGAGCACCTGTCAAAAACTGGAAGTTCTCAGCCTGGCCAACAATCGAATCACTGGCCTCCCCAACAGTCTCACCAACTTGGTAAGCCTGAAAAAACTCAATCTGAGCCACAACTGTATCGCACACATCCCAGCCTGTGTCTACGGGATGAAGAACTTAGTCTTCTTGCACCTGGCCTGCAACAAATTGGAAAACATAGCCGACCAAATCGAGCTCCTCACAAACCTAAAGATTTTAATAGTTGAGGGCAACTGCATTCACTCTTTACCCAAGACTCTTTGCTTCCTCACATCGCTGGAGCTGCTTAATGTGGATTTCAATGACATCCAGAATGTTCCCATGcaattgtatctgctgaggAAATTAAAGAAGCTGGCGTGCCATCCCTTGGATAAAGGGCTTCACATCGTACACAACCCACTTCTGAAACCCCTAGCCGAGGTTTTGGATGGAGGACTCAGTGCTCTTTTTAATTATCTGAAGTCAGTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU40745 lncRNA upstream 845156 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1244069 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 1433183 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 1540582 9809884 ~ 9812637 (+) True G32418
TU40475 lncRNA upstream 1602949 9742247 ~ 9750270 (+) False G32321
TU40925 lncRNA downstream 23850 11377956 ~ 11448251 (+) True G32671
TU40936 lncRNA downstream 278252 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 278252 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 646857 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 1255295 12609401 ~ 12612533 (+) True G32892
AMCG00019255 mRNA upstream 72287 11268008 ~ 11280932 (+) True AMCG00019255
AMCG00019254 mRNA upstream 265524 11077971 ~ 11087695 (+) True AMCG00019254
AMCG00019248 mRNA upstream 643787 10701276 ~ 10709432 (+) True AMCG00019248
AMCG00019245 mRNA upstream 694421 10648579 ~ 10658798 (+) True AMCG00019245
AMCG00019242 mRNA upstream 949728 10331115 ~ 10403491 (+) True AMCG00019242
AMCG00019261 mRNA downstream 118016 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019262 mRNA downstream 171093 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019264 mRNA downstream 200114 11554220 ~ 11567397 (+) True AMCG00019264
AMCG00019263 mRNA downstream 231687 11585793 ~ 11599813 (+) True AMCG00019263
AMCG00019265 mRNA downstream 252910 11607016 ~ 11612075 (+) True AMCG00019265
TU40734 other upstream 943722 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1724557 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 1814008 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2004400 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 2968627 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 3085147 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3810242 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4689836 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 9253368 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 9253368 20607474 ~ 20610889 (+) True G34170

Expression Profile