RNA id: AMCG00019260


Basic Information

Item Value
RNA id AMCG00019260
length 5639
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00019260
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11669895 ~ 11697021 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTTCTTTGAAGAGAAGAGGGAGTCGAGAAATGCACAAGGAAAAGAAGTCTATGGCTCAGGAGGATAGTGCGGACCTCAGATGTCAGCTCCAGTTTTCCAAAGAGGAGTCGGCCCTCATGCGTAAGAAGATGGCCAAGCTTGGTCGGGAGAaagatgagctggagcaggagctACAGAAGTACAAGTCCGTCTATGGGGATGTGGACAGCCCCTTACCCACTGGAGAGTGTGGTGGACCGCCAAGCACTAGGGAGGCCGAGCTCAAGTTGCGTCTCAAACTGGTGGAGGAGGAAGCTAACATCCTAGGCAGGAAAATCGTGGAGCTGGAAGTGGAGAACAGGGGGCTGAGAGCTGAGAATGAGGACATCCGTTGTCAGTACGAGAAGGACTGCTTGGGGAGGGAGCATATCTCCAGTGTGCCCACGTCTCCTTACGGGGATTCCCTGGAGTCGGCTGCAGAGCTACGACGCCACCTGCAGTTTGTGGAGGAAGAGGCAGAGTTGCTGCGGCGATCTATCTCTGAGATAGAGGATCACAATAAGCAGCTAACCAGTGAGCTGAACCGGTTCAAGTTTGGACCAAGCCAGGAAGCTTGTTGGGTTGAGGAAGATGGGGTGTCCAAGCCTGGTAGTGGCAACAGTGGGTTTCCTCCCAGTGGGGGAGGATTACTGCAGGAGGAGCTGAAAGCGGCACGGATGCAAATTAATGAGCTGAGCGGAAAGGTGATGAAACTTCAGTACGAGAACCGTGTCCTAATCTCGAACGTGCAGCGTTATGATTTGGCGTCCCATCTTGGCTTGCGCACAGCTAGCCCACGGGACAGCGACGCTGAGAGTGACGCAGGCAAGAAAGAATGTGAAGATGAGGACGCCGGCAGGATGTTGCCTTTGCAGCCGAAAAGAGAAGGCCCAGTTGGTGGGGAGAGTGATTCTGAGGATCTCTTTGAGAAGACCTCTGGGTTTGGCAGTGGGAAACCCTCGGAGGTGAGTGATCTCACCCCAGTGGGACTGGCCCAGCGGAAAAAGGCAGACACTGAGACTGTAGCCAATGTGAAGCGTGAGGCAGAGCGGCTAGGGAAGACGGTGGACTGCCTCATCACGGACACCGACAGCTTGATCTACGATGCTAAGCTTCTGGTGACAGGTGGGTCAGCTCTTCAGGAGGAATTCAAAGGAGATGGTGATGTGGCAGAGGGCAAGGCAGAGCCTCAGCTCCTGGATGCCATCAACACCCGCATGAAGGCCTTCAGGACAGAGCTGCATACCTTCATGGAGAAAGTGGACCACCTTGGCGAAGGCCTCAGGGATCAGGTGGATGACCTCTCCCCTATGCCAAACCTCACCGAGTCAACGAGTTTTCTGTCTGGAGTCACCTCCATGTCACGGGACTCGCCCATTGGGACCCTAGGGAAGGACCTCATCACAGACTTCCAGtccAAACTGAGGGATCAGACGGAGTGGCATCTAGCACAGGAGCTTGAAGTGGAGCCAGAGACCCACAGCGGTCATCTGGGTGCAGACCAAAGCAGGAGAACCGATGGAGACAATAAGTACTACAGGCCAGAGTGTTTAAATATAGAGCTCAGGGACGCCCCTGTTTTACCAGAGGCTAGCACTCCAGTGAGGGAGTTACAGGTCCGCCTGGAGCACGAGAGGAGACTGCGGCAGGAGGAGCAGGACAGCTATGCCAGCCGGATCATGCAGCTGGAAGAGGAGCATCGGAAAGCTCTGCTGCGGAAGGACATGGAGGTCCAGAGCCTCAGCCTTCAGGGCAAACTGCAGGAGAAATCATGGGCTCAAGAGAAGGGCCTTCTGCTGGAGGAAGTGAAGCTCTTCCGCCAGAACACCTTCATGTTCTACATCAAGCTCAAGTGGTTGCTGAAGCACTGGAGACAGGCCAAGAAGATagacgaggacgaggaggaggatcTCATGGAATATGAGAAGATCGACAGCATGCCGGAGCTGAACCTCCTGTTGGACGAGGCAGAATGTGAGGCCGAGGGACCGGAGGGGGAGTATTTCCCGCACAGTTCGGAGGAGGGCAGGGCTCAGAGTCCCCCCCTGCAGACTCCAGAACTGCTTCAGCAACAGAAACAGGTTGGCGAGAACAAGAAGGCACTGCAGGCTTTGAGGTCACTGATGGAGGAGTTTCGCTCCGAGCTGAGGGACGAGGGGCTGAGACGCTGTGAGCTGCAGCAGACCTACGCCAACGAGAAGGCCACTTGGGAGGTGGAGTGGGCCGAAATGAAATGCCACATTGAGCAGCTGGAAGGTGAAAGTGAGAAATCCCCTGGTGACAACGAGACGGCTGACCTGAAGGGGGCATtcaagagggagagggaagagcACCGGCGCCTCTTGGCAGAAAGTCACAGCACCTCTATGGACTTGAACTGGAAGCTGcagtacaatgaaaaaaactgGAGCAGAGAGAAGTTGGAGCTGCAGGACAGGTTTGAGCGCGAGAGGCAGGAATGGGAGTGGCAGATGAGAGAGCTGCAGAAGAAGATGGAAAAGCTGCAGAAGGAGCTGAGTGCCCGGCGGGGTGACGATTCGCAAGGGGAGCTGAAGGACAGGGGGCACAGTGCCTTCTCCACGCAGGGCAGCCCTCATGCCCATCGCACGGGGGCCTCCCGGTCCTACTCCGACTCTGACGAACATTTCGACGAACACGCGGGGGCCATGAAGCTGAAGGAAAGTGATCGTTTCCGCGCCTCTGAGAACCTGTTCCTGGACGCCCTGTCTCTGGACTCTCTGAGTGAGAGCGAGGTACCGCCCCCCTCTCGACTGGAGAGTGAGAAGAAGTTCCCATGCTTGAATGAGGCTCTGAATGAAATTTCTGAGGAAAAGGATCTGTCCTCGTATCATGAAGAAGAACTACGAACTGGAAGTCTGCTAAGAGCAAAGTCAGTTTGCTCCATGTCTGAGTTCCAGCGTTTGATGGACAGCTCTCCTTTCCTGCCTGAGAAGAACCTGCATGGGGACAGTGGGAAAGATGAGGTCACTCCTCCCTTGTCACCAGATGACCTAAAGTACATCGAGGAGTTCCATAACAAGGGCTGGGGCTACCCCAACACCGCGCTCGGTGGAGCTGCCGAGAATCCAGCAGAGGCTTGGGCAGAAAGGACAGAGGGCAGGAAGCTGGATCAGACTTCACATCCATTCCAAGCATCCTCATGGTTCCTGACCACAAGCGTTACAATGACAACCAACACTCTGACTAGCCCTGAGCACTGCCCAAAGCCACCGCTGAGGAGCCCTGAGAAATACGGTGTCCGAGTCTTCCATAGCCCACCCCTTAGCCGCAAATTTGACAGCACAGTCCTTTCCAGTAGTGAAGAGAAGACAGCAGTTGACCCAGACTTCATGTTCTCAGTGACCAAAGCGAAAGCTAGTGAAAGCATGGGAGGGTCAGATGAGGTGTTTGGGAGATGGACTTGTGAACTGCCGAAACAACACAAGGAGCTCCTAGAGGGTGGGCTCCACCCTATAGAGCACCCCATCTGCTCTACTGTGGGCTTTGCTTCTTCATTGCATGAGCTTGAGCTGTCCAGGAATTTGAGTGACGATATGAAGGAGGTGGCTTTTTCAGTGAGAAATGCCATCCGGTCCAACTCTGCAGAGCGCCAGTTTAAGGACACTGCCTGCCAGACCAATGGCTTCACCACTAGGGGAACACAAACCACCCAAACTATCAGTGTTGGCCTTCAGACAGAAGCTCTGAGAAACCTCACCAGCAGTCCTCACAAGTGCTTAACGCCAAAGGGAGGTTCAACACCAGTCTCATCTCCATCCCGTAGCTTGAGGAAGATGCAGTTCTCCCCTGTCATCCAGAGCAAGTTTGAACGCCCATGCTGCTCTCCAAAATATGGTTCCCCGAAGCTCCAACGTAAAATCCCAGCCAAAGTGGATCAGGCCAATAACAGGGCAGCTGCTCCAACCACACCTCAAAAATGCTTCAGTGAGTCAGCCTGGGCTCGGTCAACCACCACCAGGGATAGCCCAGTCCACACCACCATCAACGATGGGCTCTCCAGCCTCTTCAACATCATCGATCACACACCAGTGGTCTTCGACACTTTGCAGAAGTTCACCAAGTCGCCCAGCCGTCCAAGCTCTGCAGAGCCCAGGCCTGTCGAGCCCAAGTCTCCTGGATTTGGAGTGGTTCAGGAGTTCCTGAAGAATGTCCGGGGCAGGTCTCCCAGTCCTGTCAGACTGATTGTAGAGGCTCAGGGAGAGAAAACCCCTGAGGTCCTTAGCATTAGACAGGACTTGTCTGCTCCTCCAGGGTACACCCTTGCTGAAAACGCTGCCAGGATCTTAAACAAAAGACTACTTGAGCAGGCCTTCAAGGAGGAAAAAAGACTGCCATCTAGTCCACCAAACCCGAGCAAGGAGGGAAGACCCACCGAAGGAACTGCCTCGTTCTCCAGTAGCTCCACCTCTGGAATCCTGCTTCCTGAGACCGGCCAGGCCAGCCAATCGGCGCCTGCCTTCCCGGTGGGCTTCTCATtccccatcctcctctcctcagTGGTCCCAACCTCCAGGAAAGTTCTGCTTTCCTCACGAGGAGCCGCAGCAGCCGCTAGAAGCTGCAGAACCCAGTCAGGAGCACAATCCTGCATGAAGCCTCGTCACTCCGACTCTGTGCCGTAGCGTCACTCGTCAAAAGCAGCTACCTGTGCAAGTGCCACTGACACACTCCAGTAGTATACGGACCTGTGTAGAACAGCAGCCCGATGAATGTCATGGGGGGAAACCACACGGAGCAACAGACATGGGatgtgattaaaaacaacaacaataaaacgtGCCTGTAAAAATCTAGGTTCTtgattgtaaaaacaaaatatatatacagtatatatacagtacatatatatattttagtctccatcatatttttttatgggTTTATCAGGTCTGTTTTTCAGATGTCAAAGGAAAACTTGCAGAATTACAATGAAAGTCAAATGTCTCTCTATCTGGACTGcctttttgatttatttattttttaatattctttttgttttgtttttttgttttggggtaCCTTACATTTGCACTCTTATACTTTtccatgtaaatatatttttttatgattgtcTTGCATACATTTGCCATTCACTTTTATTCCTATCTTCAGAAAGCTtgaacaaaaaagtaataacaataggaatcataatgaaaaaacaaaaccactgctTCATATCAGCTGAAGCAGATAAATATGATGTCAAAGCAAGATGatatatttgctttattgtgtGTTCTGTTCTTAAAAGGGATGcattaaaatcatttaataaaaaatgacaactgTGATGAATTTGATTCGTATTTGGAAGACAACTGTGCACAATTGTGTAATACTTGATTTGCATGCCTTTTGGATCCTAGCACTTTAGTGCATGTATATAAGGCTACTGTACTCCACTATCACTCGTAATGTGAGTCACTGAATAATTACCACTGTAAAAATGTTGTGAGGTTCATTCTGTATGGTAATTCTATTGTTACTTAATTTGCAtcaattcaaaaggaaaaaaaaagatttttaaaataaatgattgtaaCAAATTGACTGTCTTTGTACAGTTGTTATGaataagttttttttctttatttcttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40936 lncRNA upstream 32015 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 32015 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 221644 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1161832 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1560745 10108906 ~ 10109150 (+) True G32490
TU41061 lncRNA downstream 303942 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 912380 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 916264 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 1614393 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1936681 13633702 ~ 13638171 (+) True G33093
AMCG00019267 mRNA upstream 21447 11640508 ~ 11648448 (+) True AMCG00019267
AMCG00019265 mRNA upstream 57820 11607016 ~ 11612075 (+) True AMCG00019265
AMCG00019263 mRNA upstream 70082 11585793 ~ 11599813 (+) True AMCG00019263
AMCG00019264 mRNA upstream 102498 11554220 ~ 11567397 (+) True AMCG00019264
AMCG00019262 mRNA upstream 134524 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019271 mRNA downstream 83380 11780401 ~ 11785241 (+) True AMCG00019271
AMCG00019269 mRNA downstream 124002 11821023 ~ 11838760 (+) True AMCG00019269
AMCG00019270 mRNA downstream 144122 11841143 ~ 11853279 (+) True AMCG00019270
AMCG00019268 mRNA downstream 163855 11860876 ~ 11867010 (+) True AMCG00019268
AMCG00019273 mRNA downstream 190984 11888005 ~ 11901076 (+) True AMCG00019273
TU40734 other upstream 1260398 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2041233 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2130684 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2321076 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3285303 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2742232 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3467327 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4346921 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8910453 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8910453 20607474 ~ 20610889 (+) True G34170

Expression Profile