RNA id: AMCG00019263


Basic Information

Item Value
RNA id AMCG00019263
length 1400
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00019263
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11585793 ~ 11599813 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCATGCAGGAGACGGTGTATGACTTCTGGAGAATGGTGTGGCAGGAGAACACTGCAACTATCGTCATGGTGACCAATTTGGTGGAAGTGGGAAGGGTGAAGTGCTGCAAGTATTGGCCTGATGATACAGAGATCTACAGAGATATCAAAGTGACACTCATAGAAACACAGCTGCTATCTGAATATGTCATAAGGACATTTGCAGTGGAAAAGAGAGGAGCACATGAGATCCGAGAGATCAGGCAGTTTCACTTCACAGGCTGGCCTGACCATGGTGTCCCCTACCATGCAACCGGGCTGCTTGGGTTTGTGCGCAGAGTGAAGTCTAAGAGCCCAGCCAATGCGGGGCCTATGGTTATACACTGCAGTGCTGGAGCAGGAAGAACTGGGTGCTTCATTGTTATTGACATCATGCTGGACATGGCTGAAAGGGAAGGTGTAGTAGATATCTACAACTGCGTGAGAGAGCTGCGCTCACGGAGAGTGAACATGGTCCAAACAGAGGAGCAATATGTGTTCATCCACGATGCCATCTTAGAAGCCTGTCTCTGTGGAGACACCACCATTCCTGCCTCTCAGCTCAGGTCTGTCTATTATGAAATGAACAGACTGGACCCACAAACCAACTCCAGCCAGATCAAAGAAGAGTTCAGGACGCTAAACATGGTAACGCCAACGTTACGAGTGGAGGACTGCAGTATAGCATTGCTGCCACGCAATCACGAGAAGAATCGGTGCATGGACGTCCTGCCTCCAGATCGATGTCTGCCTTTCCTCATTACCATAGATGGAGAAAGTAGTAATTACATCAATGCAGCACTTATGGATaGCTATAAGCAACCATCTGCGTTCATAGTTACCCAGCATCCTTTGCCAAACACAGTGAAAGATTTCTGGAGGCTGGTTTTAGACTATCACTGTACATCAATAGTAATGCTGAATGATGTGGATCCAGCACAGcTCTGTCCTCAGTACTGGCCTGAGAACGGTGTGCACAGACACGGGCCCATCCAGGTCGAATTCGTATCAGCGGACTTAGAAGAAGATATCATCAGCCGAATATTCAGAATTTACAATGCCGCAAGACCTCAAGATGGGTACCGGATGGTGCAGCAGTTCCAGTTCCTGGGGTGGCCCATGTACAGGGACACACCCGTGTCAAAGCGCTCCTTCCTGAAGCTCATTCGCCAAGTGGAGAAATGGCAGGAGGAGTACGACGGAGGAGAGGGCAGGACCGTGGTGCACTGTCTCATCGTCTGCGAGATGCTCCGGCACCAACGCTCAGTCGATGTTTTCCACGCTGTAAAGACCCTGAGGAACAACAAGCCCAATATGGTTGACTTACTCGATCAATACAAGTTCTGCTATGAAGTAGCGCTGGAATACTTGAATTCTGGA

Function

GO: NA

KEGG:

id description
K05693 PTPRM; receptor-type tyrosine-protein phosphatase mu

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40925 lncRNA upstream 137542 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1077730 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1476643 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 1665757 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 1773156 9809884 ~ 9812637 (+) True G32418
TU40936 lncRNA downstream 32545 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 32545 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 401150 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 1009588 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 1013472 12613285 ~ 12613926 (+) True G32893
AMCG00019264 mRNA upstream 18396 11554220 ~ 11567397 (+) True AMCG00019264
AMCG00019262 mRNA upstream 50422 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019261 mRNA upstream 108505 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019259 mRNA upstream 231687 11353219 ~ 11354106 (+) True AMCG00019259
AMCG00019255 mRNA upstream 304861 11268008 ~ 11280932 (+) True AMCG00019255
AMCG00019265 mRNA downstream 7203 11607016 ~ 11612075 (+) True AMCG00019265
AMCG00019267 mRNA downstream 40695 11640508 ~ 11648448 (+) True AMCG00019267
AMCG00019260 mRNA downstream 70082 11669895 ~ 11697021 (+) True AMCG00019260
AMCG00019271 mRNA downstream 180588 11780401 ~ 11785241 (+) True AMCG00019271
AMCG00019269 mRNA downstream 221210 11821023 ~ 11838760 (+) True AMCG00019269
TU40734 other upstream 1176296 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1957131 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2046582 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2236974 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3201201 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2839440 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3564535 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4444129 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 9007661 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 9007661 20607474 ~ 20610889 (+) True G34170

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01034126_00000581_00000965.mRNA True 290 mRNA 0.59 2 CI01034126 581 ~ 965 (+)