RNA id: AMCG00019265


Basic Information

Item Value
RNA id AMCG00019265
length 1538
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00019265
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11607016 ~ 11612075 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTGGAACAAGGAGTCTGTACTAAGACATATTTGGTCTGCATTGAGTCACAGTGATCACTGTGTTTTGACTAGGTGGAAAATGGAGCAGTCACCATCTCAGTCTTGGATCTCATTTGTGAATTCTCTGGGACCTAATAACTACAAAAAAACTGTCAGGGTGGTGTCTGGGAATTATCTATCAGgagaatttcaaatatttccagATGAGCATCCATACCTGTCAGTTGCAGAACTTTATTACTCTGTTCAAATAGGAGCACTGGGAGGGGAAGGAACTCGATTTGAgaacaaaaaatctatttatctGGAGGATAAAACTGTCATCGATAAAGGAGAGATTTTAGAATTAGTTGGTTTGGAAGAAAAAGACAGCACATTTCTAAAATTCAGTCTGCTTAAAGAAGATACTTCTCCTTTTGTTCTTTTGCCGCTGACCTGCAATGTGGAGCTGCAGGAATGTCATGATGACCAATTCTATACTTTGGATATGATTCTACAGTGGAAAATGCTGTTTGGGCGAAAACGCTTtgtgaaaataacaaaaggaCACAGTCTGCCATGTTTACAGCACTTCAGGGGTGTGGCTCACCTCTCACCAACATACTCCTTTAAAGTTGTTTGTTCAGgtGGAACAGAGACCATTGTTGCTTCAGACTTGGACATTGAAGTAATTGAGGTATCTGGAAAAGACTGGATTCTTAATTTTACGATGACTTTAAACATGATCTACAGAATTCCAGTAAATGAATTTCCTATCGAAGTCACAGTCTCAAAAGTTTCTTCAGAAATAAACACCACCAGTGGATTCCGAAACTTAGAAGTTGGCCAATGCTTGACcatactgaaaaagaaagaaattaaaaaatgcatagtGACAGAGTCTGCCAAACAACATTTCCTTGTGCCATCAACATACCAAGGAACCATAGTGAAAACTCCCAGAAGCTTCCCCTTTGCTTTTGACCTGTTCTGCAGCAGAACCAAAGAACAGGGGATCAGAGTACTTGTGAGGAAAGCGTACAAGGCTGAAGTACCGCTTTTATCTTCTTTGGAGGTTGGCGATGAGCTACAGGTCTTGACATCTAGAACAGTTGTGTTGGAACAAAATGCAAGACCTCAAGAGTTGGAGGTTGTTGAGTGTGTCAATGTAAAtacaaaccaaaccatcaacattccCTTGTATGCTGAGGGGCAGTTTTTAGAAATCCTAGGAGAGAGCCAAGTCTGTACTTTAGCAGAACTCCTCTCACAACCGCATTCTGTGCCCTGCAACATCATGGTGGTCAAGGCAGACCCTTCTGTGGAATCTGACCCATTGCCTGGCCTAAAGGAACTAAGACTGGAGATGGAAATATCGGACCCCTGTCTCATAGCTTTACGCAGAGACCCCTCTCCTGTTATTTTGGCACTTCCAATAGACAGGGTCAAAGTCTCGATAGAAGCTCCTCAAGAAATCCCACCAAGGATTCTAAACACTGCAACTCTGTATACAGCACAGATTGAACCCAAGCAAAAAGTGGAAACGCATCACAAGCAG

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40925 lncRNA upstream 158765 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1098953 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1497866 10108906 ~ 10109150 (+) True G32490
TU40608 lncRNA upstream 1686980 9917320 ~ 9920036 (+) True G32437
TU40581 lncRNA upstream 1794379 9809884 ~ 9812637 (+) True G32418
TU40936 lncRNA downstream 20283 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA downstream 20283 11632358 ~ 11637880 (+) False G32674
TU41061 lncRNA downstream 388888 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 997326 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 1001210 12613285 ~ 12613926 (+) True G32893
AMCG00019263 mRNA upstream 7203 11585793 ~ 11599813 (+) True AMCG00019263
AMCG00019264 mRNA upstream 39619 11554220 ~ 11567397 (+) True AMCG00019264
AMCG00019262 mRNA upstream 71645 11525199 ~ 11535371 (+) True AMCG00019262
AMCG00019261 mRNA upstream 129728 11472122 ~ 11477288 (+) True AMCG00019261
AMCG00019259 mRNA upstream 252910 11353219 ~ 11354106 (+) True AMCG00019259
AMCG00019267 mRNA downstream 28433 11640508 ~ 11648448 (+) True AMCG00019267
AMCG00019260 mRNA downstream 57820 11669895 ~ 11697021 (+) True AMCG00019260
AMCG00019271 mRNA downstream 168326 11780401 ~ 11785241 (+) True AMCG00019271
AMCG00019269 mRNA downstream 208948 11821023 ~ 11838760 (+) True AMCG00019269
AMCG00019270 mRNA downstream 229068 11841143 ~ 11853279 (+) True AMCG00019270
TU40734 other upstream 1197519 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 1978354 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2067805 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2258197 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3222424 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2827178 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3552273 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4431867 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8995399 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8995399 20607474 ~ 20610889 (+) True G34170

Expression Profile