RNA id: AMCG00019272


Basic Information

Item Value
RNA id AMCG00019272
length 4197
RNA type mRNA
GC content 0.53
exon number 19
gene id AMCG00019272
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11852108 ~ 11885571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCGCACCTCCGCGACGCTCCGCTAGAGGGCGCGCTGCTCCCCATCCCTCCGCTGCGCGGCGCGGCGCTtccctctctccccgtctctccaGCAGCTGCGGCGGAGACCACTTTAAATGTAGCACCAGGACAAGATGGCGGGTACGTACCGCCGACTCCAGCTGCAGCCGTCCGCCTTTTAACCCTCTTTCCCACAACCTCATCCCCCCCAGACCCGTGTTTTAAGCGAGGCGATGACTCGGCGAGGCTGCCGGCGGGCCGGCGATtgacctgtctctctcttgtgtCCGCAGATCTGTCTCTGCTCCAGGAAGACTCTCAGGAGGACATAGACGGATTTGGTGTGGATGACTACAGCTCTGAATCTGATGTCATTATTATACCTTCTGCCTTGGACTTTGTTTCACAAGATGAGATGTTGACACCTTTGGGAAGATTGGATAAATACGTTGCAAGcgaaaatatttttaacagACAAATGGTTGCTCGAAGTTTGCTGGACACTTTAAAGGCAGTAAGTGAGGATGAGAGGGACTGTATCGCTGTGCTGGAGAGAGTAAGCCGACTGGCAGATGATTCAGAGCCAACTGTTCGAGCAGAATTAATGGAGCAAGTCCCTCACATAGCTATTTTCTGCCAAGAAAACAGACCTTCCAttccctttgctttttctaaataCTTACTACCCATAGTGGTGAGATACCTCGCTGACCAGAACAACCAGGTTCGAAAGACCAGTCAAGCTGCTCTCCTGGTGCTATTAGAGCAGGAGCTCATCGAGAGATATGATATTGAGACCAAAGTGTGCCCGGTCCTCGTGGACCTGACCGCCCCTGACAGCAACGATGATGTGAAAACGGAGGCCATGGCAATTATCTGTAAAATGGCCCCCATGGTTGGAAAGGATATCACTGAGCGACTCTTCCTTCCCCGCTTCTGTGAGATGTGCTCCAATTTTGGAGACATCTGCAGTGTGGTTGGACGAGAGGCAACAGAAGAGCTTCTGCTGCCCAGGTTTTTCCAGCTCTGCTCGGATAACGTGTGGGGGGTGCGGAAGGCCTGCGCCGAGTGCTTCATGACCGTTTCCTCTGCCACGTCTCAGGAAGTCCGCAGAACAAAGCTCGCGTCCCTCTTCATCAACCTCATCAGCGACCCTTCCCGTTGGGTGCGACAAGCTGCCTTTCAGTCTCTTGGTCAGTTCATCTCGACGTTTGCTAGCCCCTCCAGCTCAGGGCAGTACTTCAAAGAGGAGGAGGACCGGGATGCCTGCAGATGCACACATGCCCACAGCAGTTGTGAAGAGGAGTCCCAGGACAAGGAGACTGCAGGAATTGAGCCCTCCCCTGAGGTGGGGGGGTCTGAAGAAGAGTCCAACGGACAGGAGGAGCACAGTCTGTGCTGCAGCACGGGAGAGGAGCGCTCCCTGCTGTCGTGTGAGATGAGCCAGGACTCCTCCTGTGCCAGTGATACTGATGACCACTGCGACACGGAGCCACACTCCTGCTGCCATTTGGAGGAGGCGCAGGAGTCATTAGAGTCCAGCAcccaccagcagcagcaggaggaagaggtTGAGAAAGAGGTGGAGGAGCTGGGTGGAGACGTGCCTTCCTCACAGGCCTGTCCTGCAGAGAACTGTGTGGAAACCACTTTGAAGTGCCCTGTGGAGACCCAGCTCTCGGCTGATCACACAGACCTAGCCAGCACAACCCCCGCCGAGTGCGGCCGGCCCTGCCCCAAGGAGCCGCTCCCTGAGCAGGAACTGTATAACTCATTCCATTACTGGAGGACTCCCATTCCCCACATTGACCTGGACCTggagctccagcagcagcagaaggcCGAGGAGTTGCCGAAAGAGCCCCGCCCATCTCCCTCGGCACGCGGCCCCTCCATCAGCCCGGCGCGCCGGAAAGAGCTGATGGAGTTGATCGAGAACCTGGAACCCCATATTGATGACCCTGATGTCAAAGCACAAGTAGATGTGTTGACTGCTGCCCTACGAGCCTCAACGCTGGAGTCCCACCAGGACGACTCCTCCCAGGACCCTCTGGATGACCGGATAGAGCACCGCAGGCAGGCAGGCGGCCAGGGCGGCTTCATGTCAGACACCGTGCATTTCATTGGCAACCGGGTGGAGATGGAGGGCCGGGAATCCACCCTGCAGCTGAGCCGCGGCGACGACTCGGAGCTGAGCGACAGCAGCCTGAGCCCAGAGGAGGACCGGAAGTGCCGGCAGCAGGACGTCGTACCTCAGGCCCTTCTTGACCAGTACCTGTCCATGACCGATCCTTCTCGGGCCCAGACAGTGGACACTGAGATTGCAAAGCACTGCGCCTACAGCCTCCCTGGAGTGGCTCTAACCTTGGGCAGACAGAACTGGCACTGTCTCAGGGACACCTATGAAACGCTGGCCTCTGACATGCAGTGGAAAGTGCGCAGGACTCTTGCCTTCTCTATCCATGAACTGGCCCTCATCCTGGGAGACCAGTTGACCGCTGCTGACCTCGTGCCCATCTTTAACAGCTTCCTCAAAGACCTGGATGAAGTCAGGATAGGCGTTCTCAAGCACTTGTATGACTTTCTGAAGCTGTTACAccaggagaagaggagagaataTCTTTACCAGCTGCAGGAGTTCCTGGTTACAGACAACAGCAGGAACTGGCGCTTCAGAGCTGAGCTGGCAGAGCAACTGGTGCTGCTGTTGGAGCTCTACAGTGGGAAAGATGTCTATGACTACCTGCGACCTCTGGCCTTTAGCCTGTGTACTGACCGAGTCTCCTCAGTCCGGTGGATTTCCTACAAGCTGGTGAGCGAGATGATCAGAAAGCTCTCTTCAGATTCGACTCTGGTTGCAGATTTTATGGTGGAGCTGGTGGATAAGTTCTGCCATTCCCCAAAGTGGTCTGGGCGGCAGGCTTATGCTTTCGTCTGCCAGCTGGCGATCGAGGACGACTGCATCTCCCTGGAGCAGTTTTCAGAGTACCTGCTGCCCCCGCTCCTGCAGCTGGTGTCGGACCCTGTGCCTAATGTCCGCGTGCTCCTGGCCAAGACCATCCGCCAGAGCTTGCTGGAGAAAGAGTATTTCCTGCACTCGGCCAACTCCCACCAGGAGGCTCTGGAGCAGACCTTAGTGGCCCTCCAGATGGACCTGGACAAGGATGTGAAGTACTTTGCCAGTGTGCATCCCGGCAACACTCGGATCAACGACGACGCCATGAGCACGGCCTCCTCGACCTACTGAGTGCCCTGCCTGCCCTGACCCACCAAATACCCTGGCCAAGCTGCCTGCTCCCTCAGGCACAGCTCCAGAGGACCAGGGCACCAGGGCACCGGGCACAGGGACTCCAGAGGGACCCCCCTGTCGTGCAGAGCTGCACAGAGGGAACGTCGCTCCTCCTGACCTGAGAATGGGCAGCAGCCTTCTGAGCCCCAGTGACTACTGCTGGTGGGCACTACTGCAACAAAACCACTTGGGAATGACTGAGAACACACCTGATTCGACCTCCTTCACAAACCTCCTACCATCCtaacttttttttctgccaCAGAAGCCTTAAAAGAGTCTTCCTTAATgagaaaatacttgaatttcTTGAGCCGTTTCGTTGAAAGAAAGGGGGGGATTCAGTTTCTCAGATCATTCCTCCATTCttcttttaaaactttttgttGTAGCAGAAGACAGTATGACAAAGCTTTATTGAACCACATGGCAGGAAAGCTGTGTCTAACTTAATGTTTAAAGTGTAGGGTTTTTTATACTATGTACATTTCTTAATCATATGCTGCATAAAATGTTCTATGTACTATCACAGCCTTCTATGTGAGTTCAAGAACTGCTTGGTAATGAAGCACGATTTATCTTAAGGGCTCAGTGCTACAGTGTTTTTAAACTCTAGTGCAGCACATTGTTGTACCCATGTACAGAACCGGCTGGACTCCAGGGGTCCTGTTCtcatgacaaaaacaatattgtactttttattatgCTGGCCATTTTGTggagtaaataaaaagagaaaaaggttAGCACATGTACTTGAAGTCAGGTATTTTAACTTGATAATGAAATACTGCACcttcttttgcttttcttatgggttattttcacattctgtACATATCTttggccttttttttcttttttttttttttcgtttggTCTACGATCATGTTTACTATTGTGATA

Function

GO: NA

KEGG:

id description
K15424 PPP4R1; serine/threonine-protein phosphatase 4 regulatory subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40972 lncRNA downstream 233147 11633509 ~ 11636317 (-) True G32706
TU40958 lncRNA downstream 268793 11596816 ~ 11600671 (-) True G32693
TU40884 lncRNA downstream 749957 11118708 ~ 11119507 (-) True G32635
TU40817 lncRNA downstream 900691 10968517 ~ 10968773 (-) True G32587
TU40816 lncRNA downstream 901061 10968129 ~ 10968403 (-) True G32586
TU41056 lncRNA upstream 44933 11930504 ~ 11979273 (-) True G32773
TU41062 lncRNA upstream 115379 12000950 ~ 12001165 (-) True G32779
TU41067 lncRNA upstream 174053 12059624 ~ 12060251 (-) True G32784
TU41072 lncRNA upstream 176707 12062278 ~ 12067052 (-) True G32786
TU41123 lncRNA upstream 481215 12366786 ~ 12367226 (-) True G32825
AMCG00019266 mRNA downstream 95147 11758115 ~ 11774317 (-) True AMCG00019266
AMCG00019256 mRNA downstream 541105 11283571 ~ 11328359 (-) True AMCG00019256
AMCG00019258 mRNA downstream 673673 11177703 ~ 11195791 (-) True AMCG00019258
AMCG00019257 mRNA downstream 743747 11120227 ~ 11125717 (-) True AMCG00019257
AMCG00019253 mRNA downstream 766617 11101972 ~ 11102847 (-) True AMCG00019253
AMCG00019277 mRNA upstream 50533 11936104 ~ 11954459 (-) True AMCG00019277
AMCG00019278 mRNA upstream 167089 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019279 mRNA upstream 192991 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019284 mRNA upstream 527583 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019288 mRNA upstream 557117 12442688 ~ 12445186 (-) True AMCG00019288
TU39603 other downstream 6933468 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 9690814 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 9786193 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 9786193 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10158921 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1776545 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2606320 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2606320 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 3066271 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3806911 15692482 ~ 15721452 (-) True G33381

Expression Profile