RNA id: TU41035


Basic Information

Item Value
RNA id TU41035
length 1325
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00019272
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11852108 ~ 11885571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTtccctctctccccgtctctccaGCAGCTGCGGCGGAGACCACTTTAAATGTAGCACCAGGACAAGATGGCGGATCTGTCTCTGCTCCAGGAAGACTCTCAGGAGGACATAGACGGATTTGGTGTGGATGACTACAGCTCTGAATCTGATGTCATTATTATACCTTCTGCCTTGGACTTTGTTTCACAAGATGAGATGTTGACACCTTTGGGAAGATTGGATAAATACGTTGCAAGcgaaaatatttttaacagTCAAATTCCTCTGTGTAGAGAAAGTTTAATTTCAGATCTTGAGTAtataaggttttgttttggattaTAGTAGGTGCTTTATACATAATGCATTCACTTGCAAACATGTCTGTATAATCcaagtacatttaattataaatgttttttaaaatccattattTCAATCTGCAGTTTCGCTAGATGTGGTTTTTGTGCGTGTTCACAAGTTGTCTGACCTCGGTAAAAGACCACACTGATCAAAGAGAATCTGTATTTATAACCACAAAATCCAAAAATCACATATCAAGATTCATCCTCAGTTCACACAGACATTACTGTGAATTTCATTAAATCAAAGACTGTGGTTTACATGCTGTGATCCATTTGACTTGCAATATACCTGCTGTgatatgtttttgaaaaagcaCACATCAAAATCTTTTGATAATTAAACTACTATTAATTTCAAGGCACTGAAGATAAGAGTTCATATCCCTACAGTCAGTAAATCTTGGCATAGCATGCATTTACCTGTAAAGAAGGATCAGCTATGCAAGAGTaggtttcagaaaaaaaaaaactggaaaaaaaaaaactattcatatACATCTCTGGTAAACAcctataaaaaaactaaaatatacagtaaacatgagaaaatacaaatgttttggcAAGGGCAATTATTTTACATCATACAATTGAAGCGTGTTATGCGTGTTAGGTCAAAATCAGGCGCCAGTCGCACTCGGGCGCTCAGCAGGAAAGGTGGCACTCGGCTTCAGGACTCCTTTTCTTTCAGCTCCGTTTTCCCGACGTCAGTCATGTGAAATACAAGTACTAAGTTTTCGAGAAAGTCTGACTCAGAACAGGCAGTTCATGCACTTGACGACTCTGCTTCCATAGTCGAGGCACTCCGGACCTATGCACTCGCAGCAAGCGTTGTGGAACCATCTGTATTTGGAGCCGCCCATGGACTCGCAGTACTTTTTACACTGGAGGATGGATACGCAGTCGTCGAAGTACACCACGGTGCACAGGTTATCTGGAGAGGACCGGGGATAAAGGACAAAGAATTCCATTAGGGCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40972 lncRNA downstream 215791 11633509 ~ 11636317 (-) True G32706
TU40958 lncRNA downstream 251437 11596816 ~ 11600671 (-) True G32693
TU40884 lncRNA downstream 732601 11118708 ~ 11119507 (-) True G32635
TU40817 lncRNA downstream 883335 10968517 ~ 10968773 (-) True G32587
TU40816 lncRNA downstream 883705 10968129 ~ 10968403 (-) True G32586
TU41056 lncRNA upstream 45002 11930504 ~ 11979273 (-) True G32773
TU41062 lncRNA upstream 115448 12000950 ~ 12001165 (-) True G32779
TU41067 lncRNA upstream 174122 12059624 ~ 12060251 (-) True G32784
TU41072 lncRNA upstream 176776 12062278 ~ 12067052 (-) True G32786
TU41123 lncRNA upstream 481284 12366786 ~ 12367226 (-) True G32825
AMCG00019266 mRNA downstream 77791 11758115 ~ 11774317 (-) True AMCG00019266
AMCG00019256 mRNA downstream 523749 11283571 ~ 11328359 (-) True AMCG00019256
AMCG00019258 mRNA downstream 656317 11177703 ~ 11195791 (-) True AMCG00019258
AMCG00019257 mRNA downstream 726391 11120227 ~ 11125717 (-) True AMCG00019257
AMCG00019253 mRNA downstream 749261 11101972 ~ 11102847 (-) True AMCG00019253
AMCG00019277 mRNA upstream 50602 11936104 ~ 11954459 (-) True AMCG00019277
AMCG00019278 mRNA upstream 167158 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019279 mRNA upstream 193060 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019284 mRNA upstream 527652 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019288 mRNA upstream 557186 12442688 ~ 12445186 (-) True AMCG00019288
TU39603 other downstream 6916112 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 9673458 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 9768837 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 9768837 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10141565 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1776614 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2606389 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2606389 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 3066340 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3806980 15692482 ~ 15721452 (-) True G33381

Expression Profile