RNA id: AMCG00019273


Basic Information

Item Value
RNA id AMCG00019273
length 3207
RNA type mRNA
GC content 0.35
exon number 6
gene id AMCG00019273
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11888005 ~ 11901076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGTCAAGACAAGCTCGGCTTTGCCACTGATACAGGTGTTGGGAAATCAAGTATTGTGTGTCGTTTTGTCCAGGATCATTTTGACCACAACATCAGTCCCACAATAGGtGCATCCTTTTTGACTAAGACAGTTCCTTGTGGCAACGAGCTTCACAAATTCCTGATATGGGACACAGCCGGACAGGAAAGGGACTCCTTTCAAACGTTAAAGAAATGGGTGAAGGAGTTAAAGGAGCACGGCCCAGAAGACATAGTTGTAGCAATAGCTGGGAACAAGAATGACCTTGGGGACATCAGAGAGGTTCCCATGAAAGAAGCTAAAGAATATGCAGAGTCCATTGCAGCTATTTTTATTGAAACCAGTGCCAGAAATGCTGTCAATGTTGAAGAACTGTTTCAGAAAATAAGTCGTCAGATTCCACCACTAGATCCTCAAGAGTTAGAGAATAATGAAGCCTTTAAACTGACTAGACAGCCACCACCTTCAAATAAACGCTGTTGCTAGTAAAAGTAGAGGGTAGGGGAAAGTGACACACAGGTATTACTGCAGTTTCGAAAACATGCTCCAGTCACACTTCCCAGTGGATTGAGTTAGCAAAGGGAGAGGAATGCAGTAATGTCAAAGTTAGACGGGTACTTGCAGTTAAAAAGGTTTTGGAGTAAACCTGGTATCTAGTTAAAGCTTTATGCTACTTTAACACACTTGTTTTACATCATCTCTCCAGTTAAAGtccttttttcttctactttaaattgtgtaaaatgaGCTTGATTACCTGGTGAGCTCAGTCCTGACAAATACACTGTTCAGTAGTGTTGTGAGTTTTACATTTACTGATGTCAATAAGCAATAATCATCTTAACGTTTTTATTGTCCCAAACCAGAGATCATGTAGCGTGGGTGTTCCACTTGACTGGTTGATGTGCTTCAACTTGACAACTTGTTTGAGTGCCTTTCTGGTTAAGATTGTATTTAACAACAATAGAGGATCTAAAATTCAAAAATTTGGTACATGGATTGCATGTTTTcacctttttattaaatacaaatttaccCAATTAACAGTCATATATATTTGCCCTTTTGGAATAAACTATTTTAGATGACTTTTTACACTTATTGTATACCGTACATCTTTTATTGAAGTTAAAATTATAGTTAAGATTATACACATTTGGGGCTTTCAAAGGAGATCACCAGTTGTCTTCATCATTACTTTATTCAATATTGTGTGAATAGATCTCAGTGTGTTTGGTGTATTCTTATACTGGAGTATATGTCACACAAAATAACCACCTTATCATGATCAGCAAAATTTAGAAGATTTTTAAAAGTGtccctttttcattatttgtagttatttttaaaatgcaaaaagcaaAAGTCTTACAATACATGGGTTTGCAGTATGTGATTGTATACCTTGAATAAACAATTGGAAAGTATAAACCTCTTTTATTCTGGAggtgatgtttttattgtattttatttctaatgacTGTGTCTAGGGCTCTTTCCTGCCAGAAGCCTCACCTCTTTTGATGAGAATAATGGTTTACTAGAAGAACATCCTGCTGGCAGGATGTCTACCAGTGTGTTCGTTGTAGGAGTGTTGTGTCCTGCTGGAAGCTGACTTTAGAAGAGAGTATTTACAAAGTCCTTTGCAACCCCATCATACTTAGAAGCACATTAATGATTTTCTTTCTCCTAcactgaaggggaaaaaaccCTTCAGGATAAAGTTTTTCTCAGGCTGCAGTTAGGTTGAAAGCTGCTAATGTAAAACTTACTACTGCTTGTATGTTCAAGAAGATTAGGGGAACACATTAAGTGAAAAACGTATTTTCAATTGCCTGTGTTTTCAATTGGCAGAGAGATTAATGTTTAGAGGTTTACTGCAAGTTAAATTTAGAAAGTTTGGCGCATTGCAGAGAAGTGTGAATGATCTAGGGATAGTCCCTCGAAGTGTACATTTCTACAAGGGTGTGCCAAAGCAGAGAATTAGGACATTGTACCTGACTGAGTCATTCAATTACCAGCCCTGATTAAAGAGGTGGCACATcagattaaactaaaatatatactaaCATCCCCTCCATTTTCTGCCCTGTTATAAAAGTACATTCCTATTAATTACATTCAAGTATaacatatattgtttaaatactaACTCTGTTAATGATTGTTTCcagaaaagtaaatgaatgtAGAAATACAGCATAGGGCTCAGTACAGGATAACTTATTTCAGGTACAGGAAAGTAGCAGAATATGTCACTATAACTGTTCACATAGTTtagaaaatacagttttttctcttaaataGCTTTGTATTAACCCATCTGTCTATAATACCTTGTGGGTATCATAGTACTaatcctattttttttaattatttactttataaataaagGATCAAGTactttatttacaattgttaGATCATGGTGACATGCCAAATATGCCTTGTATAAGAAACATGACTGTAAACACTAGAGGGGAATATTTGATGTGTTGATAGTTTTCTaaaaggtttttaatttttacacaATATCGATTTTCTAGCTTGTGGATAGTGCCGAATGGAACAATGAAAGGTGGGTGTAGGCTAATTTGTTGTTGctcaatattttttaagtcaTCGCTGCAACAGGATCAATACTAAATTTAGTATCATGTGcattattttctaaacaaacaaaccactttGCCTCAAAACCCAGTTATATTATTTGATGAACGACTTgaaaattttattttgtgatacaACAATTATGCAAACAGTCATTAAACATGAATTGCTACTGGGCTATCTGAGTTGTATAGCTGTGGCTCTAGATTGATTACACAGCTCCTGGGACTCAGTTTGTAGTGTTTGCACATCCAGCACTTTTCAAAGGAGCCATTCCTCTCAAAGGAGTCCTCTGGTGGGAGTGAGGGGTCATTTATTGTTCGATTAACCACATCATTTTCCTGTTTGACAATACTAGACACAgtctctttcattttatttgagaaTATTCTGATGAATGGGCTGGttccacacaaaataaatgtgcatgttattGTAGGATTAGGTGTCTGTATACTTGTGTGAACTGCCATTTTGTTAAACTAGCAAAATGTAtaatcaatgcagaaaatattaacattatatattaatctgTACATGTTAATAAACCCTGATATTATTATATAgtgtgtc

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07891 RAB22; Ras-related protein Rab-22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40936 lncRNA upstream 250125 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 250125 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 439754 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1379942 10463163 ~ 10508063 (+) True G32549
TU40671 lncRNA upstream 1778855 10108906 ~ 10109150 (+) True G32490
TU41061 lncRNA downstream 99887 12000963 ~ 12001164 (+) True G32778
TU41211 lncRNA downstream 708325 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 712209 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 1410338 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1732626 13633702 ~ 13638171 (+) True G33093
AMCG00019268 mRNA upstream 20995 11860876 ~ 11867010 (+) True AMCG00019268
AMCG00019270 mRNA upstream 34726 11841143 ~ 11853279 (+) True AMCG00019270
AMCG00019269 mRNA upstream 49245 11821023 ~ 11838760 (+) True AMCG00019269
AMCG00019271 mRNA upstream 102764 11780401 ~ 11785241 (+) True AMCG00019271
AMCG00019260 mRNA upstream 190984 11669895 ~ 11697021 (+) True AMCG00019260
AMCG00019274 mRNA downstream 23689 11924765 ~ 11930683 (+) True AMCG00019274
AMCG00019275 mRNA downstream 161346 12062422 ~ 12067044 (+) True AMCG00019275
AMCG00019276 mRNA downstream 166525 12067601 ~ 12075103 (+) True AMCG00019276
AMCG00019285 mRNA downstream 385842 12286918 ~ 12287709 (+) True AMCG00019285
AMCG00019281 mRNA downstream 423195 12324271 ~ 12325838 (+) True AMCG00019281
TU40734 other upstream 1478508 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2259343 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2348794 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2539186 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3503413 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2538177 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3263272 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 4142866 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8706398 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8706398 20607474 ~ 20610889 (+) True G34170

Expression Profile