RNA id: AMCG00019276


Basic Information

Item Value
RNA id AMCG00019276
length 1818
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00019276
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12067601 ~ 12075103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACATTCCGGGTACAGCCGAAGCGAGAAGCCGGGGCGGATGTTGAATGCGGTTCTGTCCCGCAGGACGCGCCGGTCGTTGGTCTGGGCGGGCGGTGTTGTTGTGAGTCTGGGAAGATGGCCGCAGTGCAACTTCACTTctgtcagggctctgtggaaACAAACCAGCAAGACAGAGCTGTCCTGGTTGTGGGACAGCTGGCACACCTGCACCAGCTAGCGTGGGACCAAGTGAGGGACACGTTACAGCCCCGAGTAAACGAAGAGCCCAACCCAACAGACACTTGTCCCCTTTGGCTGAACGTGGCCACTGTGGCTGCTCTCCCATCTAAAGTGAGCCGTCACAACACGCCCTCCTCGGCCCATTTCCTCACCCGCCTGGTGCGAACCTGCCTTCCTGGAAAGGCCAATCAGCATGTGGTGGTGGTTTGTGAAAGGACATCGGTCTTTGCCTCGGCATGTGCAATTGCCAGGGCGTTTCCCCTCTTCTCACGGTGCTCAGGACAGAGTACACCCAGCGAGAGTCAGAAATGTTTATCAAGCGTGGCAGAGAGTATCAGACTGGCATCCAGGATAGTGGACACACCGTGCAATGAGATGAACACTGACGACTTCCTGCAGGAGATCAAGGCAGTGGGGTCAGAAGTGGGAGTTGTTCCAGTCATCATTCGTGGGGAGGATCTTCTTAAGAAAGGGTTTGGAGGTATCTACGGAGTTGGAAAGGCGGCAGAGAGCCCCCCCGTACTGGCTGTGCTCAGTCACACCCCAGAAGGGGCTACACAGACCATTGCCTGGATTGGGAAGGGGATTGTTTACGACACTGGGGGGTTAACAATTAAAGGAAAAACTCTAATGCCCGGGATGAAGAGAGATTGTGCTGGAGCAGCTGCTGTACTTGGGGCCTTCAGAGCAGCTGTTAAACAGGGTTTCAAAGAAAATCTACATGCTGTTTTCTGCTTGGCTGAAAACGCAATTGGTCCGAAAGCAACTAGGCCAGATGACATACATCAGCTGTATTCAGGGAAAACCGTGGAGATTAATAACACGGACGCAGAAGGACGCTTGGTCTTGGCAGACGGAGCAGTGTATGCCAGCAAGGACCTCAAAGCTGACATCATCCTGGACATTGCCACTCTCACAGGGGCACAGGGTATAGTGACTGGCCGATACCATGCAGCACTCCTGACGAACAGTGAGGAGTGGGAGAGGGCTTGTGTCAAAGCTGGCAGGAACAGTGGGGACCTTGTCCAGCCCCTCGTCTTCGCACCAGAACTGCACTTTAGTGAGTTTTCATCTGCTATGGCTGACATGAAGAATTTTGACAGAAGTAATGCTCAATGCTCCTGCGCTGGCTTGTTTATCGGGGCTCACATCGGATTCAACTGGTCCGGAGTGTGGATCCATGTGGACATGGCCTACCCTGCCTACAGTGGAGAACGAGCCACAGGTTATGGAGTAGCCCTGCTTCTAGCTCTGTTTGGACAAGCCACAGATGACACCCTGCTGCAGCTGGCCTCTCCTTTGGGCTCAGTGGTGGATGGACACACAGAGAACAGTGGGCTGACAATCAATACCCTGAAGCGGAGGAGGCTGGTCTAGTCTTTCTGTCCCTGTGTCATCATTCTCGGTGACGGAGGATCCGGTGACCTCAAAAGACCCGTGCCTGTTACTTTTAGAAATTCTGTTAACACGTATTCATGTATGCCTTTGTGATGTCATTACAAATGAATAACTTACATTTAAGGGAATGTCaggcctttaaaaaatatgtattattgagatgctttaaaaaaaataaattaaatcattttttcacTG

Function

GO: NA

KEGG:

id description
K09611 NPEPL1; probable aminopeptidase NPEPL1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41061 lncRNA upstream 66437 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 429721 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 429721 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 619350 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1559538 10463163 ~ 10508063 (+) True G32549
TU41211 lncRNA downstream 534298 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 538182 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 1236311 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1558599 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 2077699 14152802 ~ 14160703 (+) True G33141
AMCG00019275 mRNA upstream 557 12062422 ~ 12067044 (+) True AMCG00019275
AMCG00019274 mRNA upstream 136918 11924765 ~ 11930683 (+) True AMCG00019274
AMCG00019273 mRNA upstream 166525 11888005 ~ 11901076 (+) True AMCG00019273
AMCG00019268 mRNA upstream 200591 11860876 ~ 11867010 (+) True AMCG00019268
AMCG00019270 mRNA upstream 214322 11841143 ~ 11853279 (+) True AMCG00019270
AMCG00019285 mRNA downstream 211815 12286918 ~ 12287709 (+) True AMCG00019285
AMCG00019281 mRNA downstream 249168 12324271 ~ 12325838 (+) True AMCG00019281
AMCG00019282 mRNA downstream 332275 12407378 ~ 12412273 (+) True AMCG00019282
AMCG00019283 mRNA downstream 355875 12430978 ~ 12440851 (+) True AMCG00019283
AMCG00019280 mRNA downstream 371830 12446933 ~ 12454372 (+) True AMCG00019280
TU40734 other upstream 1658104 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2438939 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2528390 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2718782 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3683009 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2364150 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 3089245 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3968839 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8532371 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8532371 20607474 ~ 20610889 (+) True G34170

Expression Profile