RNA id: AMCG00019277


Basic Information

Item Value
RNA id AMCG00019277
length 4319
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00019277
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11936104 ~ 11954459 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTGTTCACAGCGGCTTCATGTCAATGTGAGGGGCTCCACACACAGAGACCCGAATGGATCAgggcagacagactcaatgCTCTTCAATATCACTCCCACAGACGGCTGATCTGAGCGCGTCCAGGAGCCAGAGCTCTCTCAGCTGTCCGGGATATCCTAAGCAATTCCCTGATTGGGATTGGGAAACGATCTCTTACTACAGTTCCTGTGGGAATATAATTCATCCTTAATCTGCGATGCAAATCACTGCTGTCATTTTTGCTTCCTTTTAAGCAGTAGGTTTTGATGCCAGCTAGGCGCACAGAGATGGTCTTTGGAAAAGCAGTGTCCTGACTTGATATATCCTGTAAAATCAGTCttggtgggggaaaaaagaagaaatagagGAATGCGGTTtgaagctttattttaaaatccttccTAGGCACAAGGGACAGTTTCGTTTTTGGTCTTTGAAGTGTGGCAAGTGTTTCACCTTTCCCAGTGATGAACAGGATTACACATTAACCGAGAGCTGGAACTAAAGCGCAGCTGGAAAGCTTGGATTGAAACCCCAGAAACGTGGAAGatacaaactaaaatacaaataaaatgatacacCCTATCCTCAGTGCCCTTTACACATCTATGTTACTAATTGGCATCCTTGGTTCAGGAGAGTGCTCCTCACCCCACTTTCCAGACAGCAGGATAAACCCTCTGTCTCTGGAGAAGAACGTGGGAAGGCAGCCGAAGGATTCCCAGTGCCACCACATGCTGAAACACCTTCACAATGGAGCCAGGATCACTGTGCAGATGCCACCTAACATTGAGGGCCACTGGGTCTCCACAAGCTGTGAGGTGAGACCCGGCCCCGAGTTCATCACCAGGTCCTACAAGTTCTACCAAAATAACACGTTCAAAGCCTACCAATTCTACTACGGGGACAATCACTGCACCACCCCCACCTACACGCTGGTTGTCCGGGGCAAGCTACGCCTGCGGCAGGCCTCCTGGATCATCCGTGGGGGAACGGAGGCTGACTATCAGGTGTTCCGGACCCAGCTGGTCTGTCACAGCGAGGCCGTGGCCAAGGACATGAGCCAGCGGCTGAACCATAGCTGCCGAGGAGTGGTGTCCAGAGACGGGGCCTGGGAGCCCAACGTCAGCTATGACCTGTGGAACGAGGAGATGGGCTGCGACTGCTCCAAGGACCTCAACTTCGCCATGCACGAGCTGCAGCTGATGCGCGTGGAGAAGCAGTACCTACACCACAACCTGGACCACCTGGTGGAGGAGCTCTTTCTGGGAGACATCCACACCGAGCCAGCACAAAGGATGTACTACAGGCCTTCCAGCTACCAGGCGGCGCTGCAAAATGCCAAGaaccacGACCAGACTTGCATCGCCTGCCGGATCATCTTCCGCTCTGATGAGCACCACCCTCCCATCCTGCCCCCGAAAGCAGACATGACCATCGGCCTACACGGCCAGTGGGTGAGCCAGCGTTGCGAGGTGCGGCCCGAGGTGCTCTTCCTCACACGCCACTTTGTCTTCCACGAGCACAACCACACCTGGGAGGGGCACTACTTCCACTACTCCGACCCCGTGTGCAAGCATCCCACGTTCAGCATATACGCCAAGGGCCGCTACAGCCGTGGGGTGCACTCCACCAAGGTCATGGGAGGGACCGAGTTCGTCTTCAAAGTGAACCACATGAGAGTGACGCCCATGGACTTGCCCACCACATCCCTCCTCAACGTCTTCAGTGGCAACGAGTGCGGGGCGGAGGGCTCCTGGCAGGTGGGGATGGAACAGGACGTGACTCACACCAATGGCTGTGTGGCCCTGGGCATCCGTCTGCCCCACACCGAGTATGAGCTCTTCCGCATGGAGCAGGACGCGCGCGGGCGCTACCTGCTGTACAATGGCCAGAGACCCAGCGATGGCTCCAGCCCTGACAGGCCGGAGAAGAGGGCCACTTCCTACCAGACCCCACTGGTCCAGTGCTCCTCCAGCAGTCAGAGCTCAGAGGGGGACGGAAAGGAGAAACACAGCGATGCGAGACCCAGCGGCGGCTCAGGGAGCAGCCATAGTTCTCGGTTGGACACCATCTGTGCCTTGACCGTACTCACCCTCCTCCTGTATTTCAGctaaagagagaaaagaagaaaggcCGCCTTTTTAATCGTGCTGATCATCACAAAGAAGGGCAACTGAGACATCCTGTGGTGGGGCAGCTTCTATCTTCAAAGGCAGCCTGTTTGTTTACTTGATGTactcgaatgccttgaaactGTCGCTCCTTTTTTGGGGCAGAGGCAGAGGGGGTGGGAAGTGCAAGGAGACAGTCCTTTGATGCTGCCATCcgctgtttttcatttgaactCCATCCAGTGAAGCTGAGACTAAAAACTGCTGCACAACAGTAACTGCACTTTAGTAGAgcagatgtgtatatataaatctcaAGCTGTTTGTGACTGAAAGGAGACAGGAAGAAAAGACATGATAAATTGCGTGGAACtgattttcttttgctgttttaAACAATCTGAgggaaatatatacatgtatatgcaaAGCTTACTGTGCCTAACATTACTAATTGAGATTAGTACTGATGACTACGGTGCCTTCATACACCAAAGGTGAAGATGCACAGAAAATACTACAGTCTGGGTTTTAAAAGGGAAGTACAGCACATGGTCGATACGCAATAACTTTGAGGGCTAGAGAGAAGAACAAAGAACCATATTCAACATTTACGTTATCCTTGCTTTTCCCACTTTCCTTTCAGAaccaagaaaatgttttacaatatagTGGTATTTTCTCCAggtacaaaaaaacattaaagactgattaaatcataattttgtgtttttctgaataTAGATAGTGGATGTGCATTAGCAGTCTGTCCCTTAACCTTTCTGTGAACTGATTTAGTCCCAGACATGCTTTGGGATGAAAGTTGCACTTTTGCAaaggtctttatttattttacactgttaGATTGTCACGGCTCAGTCTTCAAGTAAATTACTCTGTAAGCTGTTATTCTGCAGAACTGGAATCATTACGCATATGAAACATTTAAGCTGTTTTTGGAGCGTTTGTTGTACCCTGTTCCTTTGTCATCCTGTGTATCTAAGAGTGACCCTGCAGGAtgtcttttaaaacatgttccAAGAAAATGAGTGTTAAAAAACACCACAGATGCCATTCCACAGAATCTGAGCAAGACAAATATACAAGTGCCGCTTCCTAGGACTGGGAACACAGTGGGGGCACCGTATCTGGAGTGATTCTGTAATACACAAAGTGCATAATGATTGTTACAGTTCTTGGTTTACAACACAGGGTAGCAGCCCTGATCACACCAAACTGTAGGCCGTTCTACCAAGACAAAGATTCGTCTTCACACTTTTCCGAATAGACAATGTGTTCCTCTCTAAATCTTTACTCAGGTAAACTCCTATTCAGCCTTGTGATGAGATCATGCCTGGTTTCTCAGCCCTCCATCTGGAAAGACAAACATCAAGTTGCTGTGGGAGACCCAGTGGCTGTGTTCCACTGTCTTGGCTCAGTGGCCCTCTGTCTAACCACCAGAACACACTGTGGCTTGGTGACCTTCCAGAAGGCCACAGTTCAAAGAAGCGCCTGAAGAAAAACTCCCAACGGCTGTTCTTCATTTGACCTCTTATGTGCTTTATCAAAAAGAAAAGCTTCATATGTGCAGATATAATTCATAGTGTGGTTCCTCAGAGAGAAAATCACTCTGTTCTAAAGCTAATATCTTGTACACTCCAGACTCCAGACATATATTACTGTATGTACTTACAGAAACAACTTTTAGCATcctataaatgcatacatacttCTGAAACAATAGTATATTCTACAGCTgtcttaataaaaacatgaaaacaacaatatcaaAATATGATCTAAatgaatcattttcatttttgcacaATAGTAGCATCCTGGAGGCAACGTTTCAATAGActtctgttgtttcttttaatgcatAACAACTGAGCTCAGTGAAAGAGAATGCAGTGCAGTGACATTTAACAGATCATTGCACTGAACATGGGATGTGAGATATTAAGTATTGGTCATTTGGCTTGTCGACTTGTTTAGCAATGTAAGCATTCCTTTTagtataaataagtaaaacacaTAATTGTGAAAACATTACGCCAGATATTCTAACTCTACTAGCTGGATTATTGCCACATAACATGAGATGTGTATATCACTGTTGTCACTTGGTGCTATCCAGGGGATTATGTATTGTTTGCCTTTGGATTAAAACGGTtcgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41035 lncRNA downstream 50602 11852108 ~ 11885502 (-) False AMCG00019272
TU40972 lncRNA downstream 299787 11633509 ~ 11636317 (-) True G32706
TU40958 lncRNA downstream 335433 11596816 ~ 11600671 (-) True G32693
TU40884 lncRNA downstream 816597 11118708 ~ 11119507 (-) True G32635
TU40817 lncRNA downstream 967331 10968517 ~ 10968773 (-) True G32587
TU41062 lncRNA upstream 46491 12000950 ~ 12001165 (-) True G32779
TU41067 lncRNA upstream 105165 12059624 ~ 12060251 (-) True G32784
TU41072 lncRNA upstream 107819 12062278 ~ 12067052 (-) True G32786
TU41123 lncRNA upstream 412327 12366786 ~ 12367226 (-) True G32825
TU41125 lncRNA upstream 459647 12414106 ~ 12417819 (-) False AMCG00019284
AMCG00019272 mRNA downstream 50533 11869464 ~ 11885571 (-) True AMCG00019272
AMCG00019266 mRNA downstream 161787 11758115 ~ 11774317 (-) True AMCG00019266
AMCG00019256 mRNA downstream 607745 11283571 ~ 11328359 (-) True AMCG00019256
AMCG00019258 mRNA downstream 740313 11177703 ~ 11195791 (-) True AMCG00019258
AMCG00019257 mRNA downstream 810387 11120227 ~ 11125717 (-) True AMCG00019257
AMCG00019278 mRNA upstream 98201 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019279 mRNA upstream 124103 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019284 mRNA upstream 458695 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019288 mRNA upstream 488229 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019286 mRNA upstream 500620 12455079 ~ 12463992 (-) True AMCG00019286
TU39603 other downstream 7000108 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 9757454 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 9852833 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 9852833 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10225561 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1707657 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2537432 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2537432 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2997383 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3738023 15692482 ~ 15721452 (-) True G33381

Expression Profile