RNA id: AMCG00019281



Basic Information


Item Value
RNA id AMCG00019281
length 387
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00019281
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12324271 ~ 12325838 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGTTGTTTAGGCAACAGCAAGACTGAAGATCAACGCATCGACGAAAAAGCACAACGAGAAGcgaataaaaaaatagaaaaacagttacaaaaagaaagacaagcaTATAAAGCCACACATCGACTCCTTTTATTGGGGGCTGGAGAGTCTGGAAAAAGCACTATTGTCAAACAGATGAGGATCCTGCACGTCAATGGATTTAATGCAGAagaaaagaaacagaaaatccaGGACATTCGGAAAAATGTGAAGGATGCCATAGTGACTATAGTTTCGGCGATGAGCACTTTAATACCCCCAGTTCCATTAGCCAACCCAGAGAACCAGTTCAGAATGGACTACATCAAAAGTATAGCTCCTCTTTCTGATTTCGATTACACGCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41061 lncRNA upstream 323107 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 686391 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 686391 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 876020 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1816208 10463163 ~ 10508063 (+) True G32549
TU41211 lncRNA downstream 283563 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 287447 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 985576 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1307864 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1826964 14152802 ~ 14160703 (+) True G33141
AMCG00019285 mRNA upstream 36562 12286918 ~ 12287709 (+) True AMCG00019285
AMCG00019276 mRNA upstream 249168 12067601 ~ 12075103 (+) True AMCG00019276
AMCG00019275 mRNA upstream 257227 12062422 ~ 12067044 (+) True AMCG00019275
AMCG00019274 mRNA upstream 393588 11924765 ~ 11930683 (+) True AMCG00019274
AMCG00019273 mRNA upstream 423195 11888005 ~ 11901076 (+) True AMCG00019273
AMCG00019282 mRNA downstream 81540 12407378 ~ 12412273 (+) True AMCG00019282
AMCG00019283 mRNA downstream 105140 12430978 ~ 12440851 (+) True AMCG00019283
AMCG00019280 mRNA downstream 121095 12446933 ~ 12454372 (+) True AMCG00019280
AMCG00019290 mRNA downstream 246889 12572727 ~ 12598517 (+) True AMCG00019290
AMCG00019289 mRNA downstream 316126 12641964 ~ 12671029 (+) True AMCG00019289
TU40734 other upstream 1914774 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2695609 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2785060 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2975452 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3939679 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2113415 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2838510 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3718104 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8281636 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8281636 20607474 ~ 20610889 (+) True G34170

Expression Profile