RNA id: AMCG00019282


Basic Information

Item Value
RNA id AMCG00019282
length 651
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00019282
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12407378 ~ 12412273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTGGAAAGAATTGACTCGGTTAGACAGAACGACTATACACCAACAGATCAGGACTTGCTTCGATGCAGAGTTTTGACATCAGGGATTTTTGAAACACGATTTCAAGTAGACAAAGTCAATTTTCACATGTTTGATGTGGGCGGTCAAAGAGATGAAAGGAGAAAATGGATCCAGTGCTTTAATGATGTGACTGCTATTATCTTCGTCGTTGCCAGTAGCAGCTACAACATGGTGATAAGGGAAGACAACAACACGAACCGGCTACGGGAGGCTCTGGACCTCTTCAGAAGTATCTGGAATAACAGGTGGTTACGGACCATTTCAGTCATCTTGTTCCTGAACAAACAGGACATGCTTGCTGAGAAGGTATTAGCAGGGAAATCCAAAATTGAAGACTACTTTCCTGAATACACACGTTACACTATACCAAATGAAGCAACACCCGAGCCCGGTGAGGACCCCAGAGTGACAAGGGCAAAATTCTTCATCCGGGACGAGTTCCTTAGGATCAGCACAGCGAGCGGAGACGGCAGACACTACTGCTACCCTCACTTCACATGCGCAGTGGACACAGAAAACATCCGCAGAGTTTTCAACGACTGTCGAGACATCATTCAGAGAATGCATCTGCGCCAGTATGAACTGTTG

Function

GO: NA

KEGG:

id description
K04632 GNAS; guanine nucleotide-binding protein G(s) subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41061 lncRNA upstream 406214 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 769498 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 769498 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 959127 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1899315 10463163 ~ 10508063 (+) True G32549
TU41211 lncRNA downstream 197128 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 201012 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 899141 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1221429 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1740529 14152802 ~ 14160703 (+) True G33141
AMCG00019281 mRNA upstream 81540 12324271 ~ 12325838 (+) True AMCG00019281
AMCG00019285 mRNA upstream 119669 12286918 ~ 12287709 (+) True AMCG00019285
AMCG00019276 mRNA upstream 332275 12067601 ~ 12075103 (+) True AMCG00019276
AMCG00019275 mRNA upstream 340334 12062422 ~ 12067044 (+) True AMCG00019275
AMCG00019274 mRNA upstream 476695 11924765 ~ 11930683 (+) True AMCG00019274
AMCG00019283 mRNA downstream 18705 12430978 ~ 12440851 (+) True AMCG00019283
AMCG00019280 mRNA downstream 34660 12446933 ~ 12454372 (+) True AMCG00019280
AMCG00019290 mRNA downstream 160454 12572727 ~ 12598517 (+) True AMCG00019290
AMCG00019289 mRNA downstream 229691 12641964 ~ 12671029 (+) True AMCG00019289
AMCG00019293 mRNA downstream 296292 12708565 ~ 12722210 (+) True AMCG00019293
TU40734 other upstream 1997881 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2778716 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2868167 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3058559 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4022786 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2026980 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2752075 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3631669 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8195201 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8195201 20607474 ~ 20610889 (+) True G34170

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000082_04953878_04974230.mRNA True 2357 mRNA 0.45 15 CI01000082 4953312 ~ 4974527 (+)