RNA id: TU41125


Basic Information

Item Value
RNA id TU41125
length 1230
lncRNA type sense_over
GC content 0.41
exon number 4
gene id AMCG00019284
representative False

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12413154 ~ 12423320 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagGCGAATTCCAAACGAGACCGATGCCGTGATGTGCACAAATTCCCTCCATCACGGCCCATCATTCTCCAGCACTACCCTCTGTATCGAGTCAGCGATGCTGAGTGCACAGGGGAGGATGCGGCCCCTCCTGAGGAGAGACACCAGGTGTTTAAGGAGCAGTATGACGTGCTCTCCCAGACAGCTTCTCAAAAGCTGCTCTGGTGGTTTAAACCCCGGCTGATCCTGAGTGgccacacacacagtgcctgcCAAGTCCTCCATGGAGACAAGTTTCCCGAGATCAGCGTCCCCTCATTTAGTTGGAGAAACCGCAACAACCCCAGCTTTATTCTGggCAGCTTTTCTTCAGAAAACGTCACTCTCTCCAAGTGTTTCCTGCCCCAGGAGAGCACCGTCATCACCGTGTACTGTACTACCGGGGTGGTGCTGATCATTTTGACTTTAGTTCACCTTCACATCTTTAAAGGCACTGTGCACTTTGCAAGTTGCCTGATTAGCAAGCACAAGTCCTTGTGACTGATGATAAACATACCCCAGGCCTTTTCTACAGCCTGCCTAAAGCAATTACAACTTTGGTTTATGTAAGAAGCACAAATGTGAAGCACAAATGTCTTTCCTGAAGTCTTCGGAGACACAGCACAGATCTAGTGATGGGCCTGCAAACTCGCACATTTAAGAAAGTacaataaagttttaaataacttttctcTCTGTATCATACTTAACGGTTCTGTTTGTCAGTATCTATATCATGCTGCTTAAACCTACAACATAACTCACAGAGTGCAGCAATTTTATGAAATAGCACAATATGAAACCAGCTCAATAAAGCCAGGTTCGATTTTGTAAACTTGAGTGTGCACGAAACTACAATGCAAAAAATTCAAGCACCaataaaatgaagtgaaataatTGAAGTAATGTAGGCTAACACTTAACTGGGTTTCTGTTATTGCAACtgtaattttaaacattgtacaAATTGTACAGGTCATCTCGGACACATGAAAATGATATACTCACAGAGACAAACACctaagtataaaatataaagcagtGTAATAGTTACTAAAAAAGGACATGCCTTATTGCTAAagcaatttttgcttttttttttttaaatcgcaCTGTACCACaacttgttctgagaaatgtaatttgcataaaTTATTCAAGTTAGAGAAATATTCACACTTttcaattctaaaataaaacgAAGTCTTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41123 lncRNA downstream 46880 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 347054 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 353855 12059624 ~ 12060251 (-) True G32784
TU41062 lncRNA downstream 412941 12000950 ~ 12001165 (-) True G32779
TU41056 lncRNA downstream 434833 11930504 ~ 11979273 (-) True G32773
TU41149 lncRNA upstream 34778 12452597 ~ 12453627 (-) True G32844
TU41374 lncRNA upstream 686134 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 750617 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 837544 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 893684 13311503 ~ 13311800 (-) True G33076
AMCG00019279 mRNA downstream 275499 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019278 mRNA downstream 360888 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019277 mRNA downstream 459647 11936104 ~ 11954459 (-) True AMCG00019277
AMCG00019272 mRNA downstream 528535 11869464 ~ 11885571 (-) True AMCG00019272
AMCG00019266 mRNA downstream 639789 11758115 ~ 11774317 (-) True AMCG00019266
AMCG00019288 mRNA upstream 24869 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019286 mRNA upstream 37260 12455079 ~ 12463992 (-) True AMCG00019286
AMCG00019287 mRNA upstream 48307 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019291 mRNA upstream 182714 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019292 mRNA upstream 198328 12616147 ~ 12635259 (-) True AMCG00019292
TU39603 other downstream 7478110 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10235456 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10330835 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10330835 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10703563 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1244297 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2074072 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2074072 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2534023 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3274663 15692482 ~ 15721452 (-) True G33381

Expression Profile