RNA id: AMCG00019285


Basic Information

Item Value
RNA id AMCG00019285
length 606
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00019285
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12286918 ~ 12287709 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgggGTTGTGCTACAGTCTGCGTCCGCGGCTCTTCGGCGAGCCCAGCGGCTCCATCTCCAATGCTACTACCTCGGACTCGGAGCAGCCGCCCGACCCCACCGTGCCGCTCCGCGCTGGGGACCTGCGCCACGGAGACACGGGGGGATACGGCGAGACGGTGCCTCTCCGCCGTGGGGACGCCGGCAAGCTGTCCGCCGGGGACCTCCGCCGTGGGGACACCAGCGTCGACGGAGTGCTGATGCAGAATGGAGGTGGCGGAGGAGGCAGGAGCGCAGGACCGGACCGCAGCCGgcagctgcagctgctgcagaaacacagcacccaaaagcagcagaaaaacTGGGACAAACTGCgggtggaggagaaggaggccgAGAAGGAAGCGAAGAAAGTCAGTAAAAATATCGACCGGGCTCTGAAGGAGCAGAAGCGGGAATATAAGCAGACGCATCGGCTGCTGTTACTGGGGAAGACGCAGGAGTGTCCTCTGAGCTGGGCTGTCCCACCCTTGTCCGGCCGGGCATTGATGCTGCTGTCCGCGGCCGGGGCTGGGACAGGGGTCGCCCAGCTTGGGTTTGTTCAAGCAGGCAAATGCTATCATTAA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41061 lncRNA upstream 285754 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 649038 11632358 ~ 11637880 (+) True G32674
TU40937 lncRNA upstream 649038 11632358 ~ 11637880 (+) False G32674
TU40925 lncRNA upstream 838667 11377956 ~ 11448251 (+) True G32671
TU40745 lncRNA upstream 1778855 10463163 ~ 10508063 (+) True G32549
TU41211 lncRNA downstream 321692 12609401 ~ 12612533 (+) True G32892
TU41212 lncRNA downstream 325576 12613285 ~ 12613926 (+) True G32893
TU41445 lncRNA downstream 1023705 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 1345993 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1865093 14152802 ~ 14160703 (+) True G33141
AMCG00019276 mRNA upstream 211815 12067601 ~ 12075103 (+) True AMCG00019276
AMCG00019275 mRNA upstream 219874 12062422 ~ 12067044 (+) True AMCG00019275
AMCG00019274 mRNA upstream 356235 11924765 ~ 11930683 (+) True AMCG00019274
AMCG00019273 mRNA upstream 385842 11888005 ~ 11901076 (+) True AMCG00019273
AMCG00019268 mRNA upstream 419908 11860876 ~ 11867010 (+) True AMCG00019268
AMCG00019281 mRNA downstream 36562 12324271 ~ 12325838 (+) True AMCG00019281
AMCG00019282 mRNA downstream 119669 12407378 ~ 12412273 (+) True AMCG00019282
AMCG00019283 mRNA downstream 143269 12430978 ~ 12440851 (+) True AMCG00019283
AMCG00019280 mRNA downstream 159224 12446933 ~ 12454372 (+) True AMCG00019280
AMCG00019290 mRNA downstream 285018 12572727 ~ 12598517 (+) True AMCG00019290
TU40734 other upstream 1877421 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 2658256 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 2747707 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 2938099 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 3902326 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 2151544 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2876639 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3756233 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 8319765 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 8319765 20607474 ~ 20610889 (+) True G34170

Expression Profile