RNA id: AMCG00019286


Basic Information

Item Value
RNA id AMCG00019286
length 2891
RNA type mRNA
GC content 0.45
exon number 15
gene id AMCG00019286
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12455079 ~ 12463992 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATTAATCATTGGTGTATTCACATTAGTTTAGCCTTGAACTGACTTGATTAATAAAGGGTTTGATTGACTACTTTAAGATCAGCAATACATATGTAGATGTCTCTTTAAGACTAAAAAGGGGGCACATGCTTCCAATGTGAtcttaaacacaaataaaaataaagcaagctCTTCGACCAACgatgcttttttttataaagtctTGATTGGCATCACACATAGGTTGCTGctacacatacaaacacttgaacacacacacaatggccCGCATTGACCCATAAGCTCCACTGACACCCCACACCCAGTCCAGTCCGCACAGGCCGGGTAGTTGCAGCCAGAGCGGGTCGATCCTGGTCTGAAATCGGCGTGTAGTTGCAGCGTCATCGTGAGGAGCCGTTTGAATGAAGAGAGAGGCGAGATCTACAGACCACAATAAGCGGCCCAGCGTCTGGATTTGGACATTAATAGCAGCAAACTTGCAAAATGCCGATTTTCACAGTGAATGTGAAGTGGGGCAAGGAGAAGTTTGATGGCGTGGAGCTGAACACGGAGGAGCCTCCCATGGTGTTCAAAGCCCAGCTGTTCGCCCTGACTGGGGTCCAGCCCGAGAGACAGAAGGTGATGGTGAAAGGTGGGACGCTCAAGGGAATGACCTTGTTAATGATGGGCTCGGCAGAAGCTCTGCCCGAAGAGCCTGCGGTCCGTCCAGTCTTTGTTGAAGACATGACGGAAGAGCAGCTTGCCTCAGCCATGGATTTACCCTGTGGACTAACAAACTTGGGCAACACTTGTTACATGAATGCCACTGTGCAATGTCTGCGCTCTGTGCCTGAACTCAAAGACTCCCTTAGGAGGTATTCAGGTGCCTTGAGAGCGTCTGGGGCAAATGCATCATCTCAGTACATCACAGCAGCCCTGCGTGATCTGTACGAATCCATGGATAAAACCTCTTCAAGTATACCCCCGATCATTCTCCTGCAGTTTCTGCACATGGCTTTTCCCCAGTTTGCAGAGAAGGGAGACCAGGGCCAGTATCTACAGCAGGATGCCAACGAGTGCTGGCTGCAGATGATGAGGGTGCTGCAGCAGAAGCTTGAACCACTGGAACAAGAGGCTCCCATGGAGACGGACTCTGGGACAGCAGCAGAAGGTGGAGCAGCAGCTACTCCAGTGAAGAAGAACTTCATAGACCAGTATTTTGGTGTAGAATTTGAGACCACCATGAAGTGCACAGAGGCTGAGGACGAGGAGCCCACGAAAGGCAAGGAgaaccagcttcagctcagctgctTCATTAACCAGGAGGTGAAATACCTCTTCACAGGACTGCGCCTGCGTCTTCAAGAGGAAATCACCAAGCTGTCTCCATCTCTGCAGAGAAATGCTTTGTACATAAAATCTTCCAAAATCAGCCGCCTGCCTTCGTACCTGACCATTCAGATGGTGCGATTCTTCTACAAAGAGAAGGAATCAGTGAATGCCAAAGTCCTGAAGGATGTGAAATTCCCTTTGATGCTTGATGTTTTCGAACTGTGCACTTCAGAGCTGCAGGAGAAAATGGTGTCAACACGCTCCAAGTTCAAGGAGGTTGAAGACAAAAAGCTTAACCAGCAGCAGCAAAAGGCAAGTGTGGATAAGAAACCTGCAGCTCCTAAAGAAGTGAAATATGAGCCGTTTGCATTTCCTAATGATCTAGGCTCCAACAACAGTGGTTACTATGACCTCCAGGCTGTGCTGACGCACCAGGGAAGATCAAGCTCGTCTGGACACTACGTAGCCTGGGTTAAAAGGAAAGAAGATGAGTGGGTCAAGTTCGACGATGACAAAGTGAGCATCGTGGCCCCAGAAGACATCCTGAAGCTGTCTGGGGGAGGAGACTGGCATATAGCCTATGTTCTGTTGTACGGGCCTCGCCGGCTAGAAATACTTGAAGATGAGCAACAATAATTACTATTCAAAGAAAATGCCATTTCCAAGCACTGTCTGCATAGATGTGCAATAAATATTTGTGTCTTTAAAACTTCTGACCTTAAAATCTTTTTGTAATTGATATCGATGCATCTTGCACATCCTTGTGCATCATTACTAAAAGGGCAGCGTGCGggtgtgttttttcccccccccaaaacagtTATCAAATGCAAGTAAAACAAGTGCCCCGGCTTTTACGTTCTTTACCGAACTGGCAAATCTAGCTGTTCAGTTATCTTCTACATTTTATAAACTTTTTAAGAGCAGTGCTCATACTTATTTGGTAGCACTGTAAAATGACCTTGACTTCAGTTCTGATCCTAGACGGCTTTTATCGTTCAGGACAAGTTCTCACTGGGAGAAATACTGCTTTATATTAACTAGTCCCCCACCCCCTATCCCCATGAAGAAACACCAATAGGGTATGAACTGATGTAGAATACAGCCCTGTTTGTACCTTGCCTTTAGTGTTGGGCAGAAGGCTGCACTTGTTTCTGATTTACAGTTAAATAAGCCAAGtaacttttaaaagcattgtaGATGAGTCTTTCTGACTCTTCAATTGGTTCATGGAAACCCTGCACAATCACTTCATTTGTGAACTGTTTTAATATCAAATCCTGTAaacattatttgtaatacaaagaTATTTATTGCACTCATACGCTCCACATTAATTTGTCCTTGTTGCATGGATACTGCCATCCTACAATGTGCGATTCCTCGCCTTCCATGCTCTACCTTGGTGAGCGGGAAGAAAGGACGTTTATTGCCTCACTATGTAACTCAGTGCTGCTGCCCAAAATCTACCCAACCATACTGCCACTGTCATGTGTAAGCCCAGAACAAAGTGGCAagtctcatttatttttgtcataagTTATTGATTGCTGGCTTttcataaatggaaaaaaataaa

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K11843 USP14, UBP6; ubiquitin carboxyl-terminal hydrolase 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41149 lncRNA downstream 1452 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 37260 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 87853 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 388027 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 394828 12059624 ~ 12060251 (-) True G32784
TU41374 lncRNA upstream 639961 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 704444 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 791371 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 847511 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 1169294 13633286 ~ 13633502 (-) True G33092
AMCG00019288 mRNA downstream 9893 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019284 mRNA downstream 31759 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019279 mRNA downstream 316472 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019278 mRNA downstream 401861 12052660 ~ 12053218 (-) True AMCG00019278
AMCG00019277 mRNA downstream 500620 11936104 ~ 11954459 (-) True AMCG00019277
AMCG00019287 mRNA upstream 2134 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019291 mRNA upstream 136541 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019292 mRNA upstream 152155 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019303 mRNA upstream 475015 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019302 mRNA upstream 521755 12985747 ~ 13006328 (-) True AMCG00019302
TU39603 other downstream 7519083 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10276429 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10371808 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10371808 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10744536 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1198124 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 2027899 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 2027899 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2487850 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3228490 15692482 ~ 15721452 (-) True G33381

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031760 True 2200 mRNA 0.47 16 NC_007113.7 2790573 ~ 2813259 (-)