Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00019289 |
| length | 1899 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 12 |
| gene id | AMCG00019289 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030124.1 |
| NCBI id | CM030124.1 |
| chromosome length | 51038645 |
| location | 12641964 ~ 12671029 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0021521 | ventral spinal cord interneuron specification | biological_process |
| GO:0045747 | positive regulation of Notch signaling pathway | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0060113 | inner ear receptor cell differentiation | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0048793 | pronephros development | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0009880 | embryonic pattern specification | biological_process |
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0002090 | regulation of receptor internalization | biological_process |
| GO:0021654 | rhombomere boundary formation | biological_process |
| GO:0031076 | embryonic camera-type eye development | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0051865 | protein autoubiquitination | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0001885 | endothelial cell development | biological_process |
| GO:0021986 | habenula development | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045685 | regulation of glial cell differentiation | biological_process |
| GO:0021508 | floor plate formation | biological_process |
| GO:0021519 | spinal cord association neuron specification | biological_process |
| GO:0021520 | spinal cord motor neuron cell fate specification | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0030139 | endocytic vesicle | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K10645 | MIB; E3 ubiquitin-protein ligase mind-bomb |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU41212 | lncRNA | upstream | 28038 | 12613285 ~ 12613926 (+) | True | G32893 |
| TU41211 | lncRNA | upstream | 29431 | 12609401 ~ 12612533 (+) | True | G32892 |
| TU41061 | lncRNA | upstream | 640800 | 12000963 ~ 12001164 (+) | True | G32778 |
| TU40936 | lncRNA | upstream | 1004084 | 11632358 ~ 11637880 (+) | True | G32674 |
| TU40937 | lncRNA | upstream | 1004084 | 11632358 ~ 11637880 (+) | False | G32674 |
| TU41445 | lncRNA | downstream | 640385 | 13311414 ~ 13311742 (+) | True | G33075 |
| TU41465 | lncRNA | downstream | 962673 | 13633702 ~ 13638171 (+) | True | G33093 |
| TU41531 | lncRNA | downstream | 1481773 | 14152802 ~ 14160703 (+) | True | G33141 |
| TU41546 | lncRNA | downstream | 1614536 | 14285565 ~ 14286016 (+) | True | G33153 |
| TU41557 | lncRNA | downstream | 1820863 | 14491892 ~ 14492206 (+) | True | G33161 |
| AMCG00019290 | mRNA | upstream | 43447 | 12572727 ~ 12598517 (+) | True | AMCG00019290 |
| AMCG00019280 | mRNA | upstream | 187592 | 12446933 ~ 12454372 (+) | True | AMCG00019280 |
| AMCG00019283 | mRNA | upstream | 201113 | 12430978 ~ 12440851 (+) | True | AMCG00019283 |
| AMCG00019282 | mRNA | upstream | 229691 | 12407378 ~ 12412273 (+) | True | AMCG00019282 |
| AMCG00019281 | mRNA | upstream | 316126 | 12324271 ~ 12325838 (+) | True | AMCG00019281 |
| AMCG00019293 | mRNA | downstream | 37536 | 12708565 ~ 12722210 (+) | True | AMCG00019293 |
| AMCG00019295 | mRNA | downstream | 96925 | 12767954 ~ 12778615 (+) | True | AMCG00019295 |
| AMCG00019297 | mRNA | downstream | 187951 | 12858980 ~ 12873054 (+) | True | AMCG00019297 |
| AMCG00019300 | mRNA | downstream | 210952 | 12881981 ~ 12882526 (+) | True | AMCG00019300 |
| AMCG00019296 | mRNA | downstream | 234445 | 12905474 ~ 12916716 (+) | True | AMCG00019296 |
| TU40734 | other | upstream | 2232467 | 10404639 ~ 10409497 (+) | True | G32539 |
| TU40438 | other | upstream | 3013302 | 9369898 ~ 9628662 (+) | True | G32293 |
| TU40426 | other | upstream | 3102753 | 9261374 ~ 9539211 (+) | True | G32286 |
| TU40432 | other | upstream | 3293145 | 9329479 ~ 9348819 (+) | True | AMCG00019215 |
| TU40199 | other | upstream | 4257372 | 8345455 ~ 8384592 (+) | True | G32130 |
| TU41554 | other | downstream | 1768224 | 14439253 ~ 14486706 (+) | True | G33159 |
| TU41707 | other | downstream | 2493319 | 15164348 ~ 15169841 (+) | True | G33283 |
| TU41862 | other | downstream | 3372913 | 16043942 ~ 16081943 (+) | True | G33406 |
| TU42780 | other | downstream | 7936445 | 20607474 ~ 20610889 (+) | False | G34170 |
| TU42783 | other | downstream | 7936445 | 20607474 ~ 20610889 (+) | True | G34170 |
