RNA id: AMCG00019291


Basic Information

Item Value
RNA id AMCG00019291
length 6856
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00019291
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12600533 ~ 12613847 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAACTTTCAGTGCGCCGAAGAAACAGCTGCGACCGAGAAACAGAGAGGAAAGTGAGCGCAGTCATCGCTATTAACACCGCCAGTGTGTGCACAACCACGGTGGGAATATAAATCGCTGTTTTGGATCTCATTCTGGGTGTTTTTGGAGATAATCGAGTTAGCCgtgtttttcctcctcctcctcttcgtcAGCTGGCTGGTCTTCCTGCGTCCGTCGCTGACGTGCAGGACCGGGTCCAAATAATGCACCGTCCACAGCGCGGTCCACTTCAGTGTCTGTGCCCGAGTTGAGCTCATGGACACTGGATGTTTCCTGAAGGTCCCGCAGAGACAACTGAAAAGGATGCCAACTCAGAAAAGAACATCAGCTTCACTGGAGTCTCAGGCCAAGAAGAGAAAAGTAGAGCAGAAGGCAGTGGCTACACAGCCCAAGAGAAATCCGCTAAGAACTCTTGTCTGTCCTCGTGCCAAGAAAAAGCCACCCGCTTTGCAGAAAGATACAAAGAAACTCGCGACAGCACTTAGTAGCAGGAAGCCTGTACGACAGTCCTCTAGGGTTAAGATTAACCAGCAATCTGCTGCAGAGAACGAGCTAAAACCTACGGAAGAGACGGGTGAGGAAGGGAAAAGTTCGAGGACTAGGATGAAAACGAACCCTAAATCTGACGCTCAGAAGAAAAAGAACTCTGCAGGTGTAAAGTCATCATCGAGCAGGTCTTTGCAGAGAGCGTGCCAGTCGCGGCCAGTGCAAAGTGCAAACAGCTCTTTAAGAAGAGCACGAGACATTCTGCTCAAGAAGTCAAAAGGCAAGGCTTCGGCATCTAGATTAAGAGGCCGGAATCAGGTGTCGGGGAGAAAGGCCTCCAGGAAGTCCAGCAAGTCCTCTGGCAAAAAGGAAGTAAAGTCGGAAGGAATGACAAAAAAAGCAGATGCCCCCCCAAGACCGGAAGGTAATAAAAGGGAATCTTTGAGACTGAGCGTCGAGGATACGCCTGTAAGGACTCTGCGCAATCGAGAGGGAAAAGCGGCTTCGTCTGACCGGGGACCAGCACAGAAAAGAAACCGATTGGACACAGGTTCTCCCATTGatctgaagaagaagaagaaagattgTTCTGTGCCTAAGGAAAATGCAAAACGGCGGATTTCtagaaaaaatgacaacaaaggCAAAGGACTTCAGAATTCCCCGGGCTCTAAAGTCTCAGAAGAGGATGGCAAGGTGGCCTTCAAGAAGGTTGCGCTCTCCACAAAGCAAAGCCTAAGTAAAACTCAAGATGGGAAGAATGCTCCGAGACAAAACTGCAAAGCAACTGTGGATGTGTCTAAGGAAACATCACCTGGCACGAAAGGGAAAAAGAATATGAGCAGGGAAACCAAACGGACCGGTCTGAAAAAGGCCTCCCCTCCGTTGGTGGCACTTCTGAAAGTTATTAAGGAATCAAATCTATACAAGACCTCATCTACTGCGAAAGGTGATGCATGTATAGCAGACGCACAGGGCCTGAACAGATGTTGCACTGATCCAAATATTTTAGAGAAGCTTAAAATGGATGCAGATGAATCCAGTGAAACTGCAAGCCATGAAGGTAAAACGAGCTCCAAGACGCTAGCAACTGAAGCGGCTGTGGGCTCTGATACTACAGACACGAACAGTGATGATAAGAAACAGAATATTTCAGTTCCTGGAAAGAATACAGACTCATCTGTGTTACAGGTGGTCGAAAATAAGAGTTGccttaaaacaaaagtgttgCAAGGAGCAGCTGAGAGAGACTCTTGTTCTTCAGATCAGCTGAATGATGAGGGGCAGGCAGATAAAGGCTCCTTGCCTGTACAGTCTCAGGAAGATTCCTTGAGTAAAGCTGGGCTGCCTAATATAGGGAAACAGATctcaaagaaaaccaaagccAAACAAGCTCCTCCAAAAAGGCAGGAAATGAACCCTCAAGCTAAGACGAAGGCACGGCTTGCAGCACTCGCCGAGGAGAAGGCTGCGGCATCGAAGAGGGCTGCCAGGCAGTTGAATTTACTGGCTTTGTGTGAGGAGATAGCTGACGATATTGCCTCGGACACAGTGGAGGTGAAGAAAGAGGAGGAAGGCGCCGTGTCGGAGCAAAGCAAGCTAGAGACCGCGGGGGTAGAGCCCAAGGAGGAGTCCGAGGCTGTTGGTGACAGTCCGGTCTTGGAGGCAGCCTGTCCATCTGTGCCCCCGGCTAATACTCCGCAGGAGGAACCGAAGAGgcgcttcttcttgagccaaaTCGCAGTGCCTTTGAAAAGCAACGAGAGAAAGAAGCCTTCCCGGTTCCAGAGACTGCGGCAGACTGAAATTCAGCGGGAGCATCTGAGCTGGACTCGAGTGAAGCAGCTGAAAACGGAGCAAGCCGCGCAGAGGACCGTCCTGAGCAGTGAGCCTGTACCAAAGGCAAGTGTGCTGCCCACTCCGCCCgccctctctctgcctgccaCTGCCACCACGCCGAAGGAGGCACAAACGGAAAACAAGCCACAGCCCGCTGTCACAGTGCCACTGTCTAACGGTGGAGTGGGCAGCAGCGTTAAGTTGGTGGAGTACAAAATTTACAAACCACGAGTTAAATATTCAGCGGATGACTTTGAACTTGATGGAATGGAAGAGGAGCCTAAAACAGCACCTGGAAAAATCGCAGACACAGCACTTAGTGTggcaagtttaaaaaaagaggCTGCATCACAGGGCTCTGTGCTCTCGGTGGATTCCAGACCAGCTGCCTCCCCTCACAGCAGGGGACTCCCTCCAGTGGTGCAAGACAAGCTGCAAGACGGCCATGATTCTGATGTGGCAGAACACAAGCTTCCAGCCAAGACCGACCTCGCCAATGTGACTTCCTCTGAAACCTGCAAGGCATTGCTGTCCAGCCAGTCGTCTGGAATAAGAAGTGAAAGCCCACTGTCTGATGCCAGGTTGCACAAAGAAATTAAGAAGTTAAAGGAAGCAGAGAAGGATGGTACTCAGCAAACTGTAATAgACGCCGGGCAGAAGCGCTTTGGGGCCGTCACGTGTGCAGTGTGTGGAATGTTGTACTCGGCAGCCAACCCGGAGGATGAGTCCCAGCACCTGCTGTTCCACAACCAGTTCATCAGTGCCGTGAGATATGTGgggtggaaaaaagagagaatttTGGGAGAGTATCCAGATGGTAAAATAATTCTGGTTCTTCCAGATGACCCAAAGTATGCCCTGAAAAAGGTGGAAGAGATCCGGGAGATGGTGGACAATGACCTGGGCTTCCAGCAGGGCTTCAGGGTGATCGAGGAGCAGGGGCCCGAGGGCTCGGAGCGGGAGAAGCTGATGTTCGAGCGGCAGAGGGCCTGGTGCTGCTCCACCACCCCCGAGCCCGCACTGTGTGGCATCAGCCGCATCTGGGTGTTCAGCATGATGAGGCGGAAGGGCATTGCCTCCAGGATGATCGACTGCTTGAGGAGCACCTTTATCTACGGGTCTTACTTAAGCAAAGAGGAAATTGCGTTCTCCGACCCCACGCCTGACGGGAAGCTCTTCGCCACACATTACTTCGGGACTTCCCAGTTCCTGGTCTACAACTTCGTCAGTGGGAGTCGCTCTCCGCAGCCCAAAGCTACCGTTGACGATTAGGGTCTTTTGAGCATGCCAGTATCAGTGCATTGACATCACTGGAATATTTTCTAATGGTTCAAAACCGGTTATTTGCAAATGGCCACCAGGAAGAACTTAGAAGGGCGTTGTTTAGTTGAGTCATTAGGAGAtgatattttctgttattttattgttttacagaaacaataGAATTGAGCTTTGCTTAACAACATTTAAAGCTGTTGAAACCACACTTGTCTTGGTAAAGTGTGAGAGAgggatacattttcaaaaactcaGGTCTAGGAAACAGCCAGgtggttgttttaaaataacggagtcaacatttttttaagttttccttttcttctcatAGCTCTTCAGTATTTTGGGACAAAAGCctattttgttaatgtgtatttttaagagaagataatgtattttattgaatttaacaattacaaaaatgtttacatGCATGGTACTTTTGACACTGAAAAGTCAGACCAATCCCAAAAGCTTTAACTGTGCTAGGTTTTTGATTTTTATAAAACCTTATTTGAAGGCCCCTCCGGGCTTGTCTAGCTCGAGTAAATGAGGCAGAGCGGCATAATCCTTGTGTTTGAAACATCTGTCCCATAAAAGTGGATGGATGAAGTTCAACATTGTATTGCTGAAAAATGCCTGTCCAAGAAAGTGAGAGCGTGCGTTTGGGTTGTTCTTTCTGTCGCAAAGACGAGAACAACAGTGCCGTCTTCAGTAGTGCTTGGCTGTGATGGTTAATAGGCCGACTAAAACCCCtgggttttctatttttttggcAGGCGGTGCTGTTAGTGCACTTTTCACTGTTTTTAAGGCACTTTTCAGGCTTATAGAGAGGCAGACAGCCACAAAtcccattgttttctgtttttccacatGATGGTGGAAGCAGTGGTTCACAGGGCACAGGGTGCTCATGTAAGCTTCCCCTAGATCAGAAGAGAATTAAATGCTTCTTGTTAAGCTGAACCCAATTATATGTGCCCTTGGAGGGTCTTATCTGTGGTGATTTGGGTTggtgattgtgttttgttttgttttttgtttgttttactccaGAAGAGACTTCTGGAAAATTGTGTTGGAATTGAGAAGAGTTTAGCTTATTTCATGATTAGTATCTCAGTGAGATGCAAAGTTTTAACTGGCAGATGAAAGTAATATAGGACGTTTGTCTGGTATATTGACTTACTGTGTGTTTCACCCATTAGGATCTAAAGACCAAACTGAGCTTGTACTGACCGGCCTCATGGGCCCTTGCAATTCATTCCCCCAAGCCAGAGCTGAACTCTCCTTCCCAACGCAGAGACCTTGTAAAGGTCTTGGAGAAGTCTGTCAATCCCAAGAGGAAGGCTTGGATTTGATTATGGTCTATGCAGTTCTCTTTATTTATAGTTGGTAGAAAATACTGCAGGGAAAACAGTCCATGTTTGTATGAAGAGCAATATTTTCATTCCATATTTGAAACCTTGCAGCTTTGTTGAACctgtttgttgtttgtctttgtttttccctttgtgtGATGAAAACTGCTGTTCTGTTATTGGTTGAACATTTCTGACACCGCTGACTGGGCTAAGATCTGGCCCCGTTATTGTCTGAGAGCTCTGGACTCGCAATTGTCTCATTTACACTGCTTTGTCAAAAAAAGAGTGGGGAGGGGGAAGCACGTTGCCCTGTGCAGAAACTGGCCCCTTGGCTAAACTTCAAAAATCTAGTCCCTGTtttcaagaataataataaactgcttACAGTTATATAAACAACatagttaaatatttttcattaaaaaaatacaataaataaaaccacgaGACTGCAGCAGGCCTGGCTTTGTTCGTTACAGTGCAGCGCACTGCGGCTACACTCAGCAGCAGCTGTATGGGATTAACCCTTTGTAGTCTCGTGTCAGAGCTAGTGCCACTGTGATCTGACAGAAGCCACTAAGTGAGTGTCCAGCTCTGGCTGAGCGGGAGCCAGTGTGGGATGGTGAGCACAGGGAAGGCCTTTAAGACCCTGCACTGGGCCTGGGCTCACCACAGACACGCAGGGCAGCGCTGTGAGAGAAGCACAGACCGATGCCGAGGATTTGGTCATATTAGAGCTAGAATATAATTATGTGGGTGTCGGTAGATGACCGTCAGATCGTATTCCTATTCACAGTTGTTCATCCAAACATACCCTTTCAACCTGTAGTTGCTTCATAACTGATCAACTAATTGTAGCTGAATATCAGAACattgtgtaatgtattttctcaGGAAAATAAGCTGTGCCTGACCAGCCCGTCAGTTCCTCCATGCATTGATTGTAAAGGCTTAATTCTGGAGTTCACACAGACTAGCTGCCTGGTGTTTGGGTTTATATTTGGTTAGTATAAGTTCTTGCATTTAAATTCTATAAAGCCCATTCTTCCCCTAGAAAAAGTCTATACAAGGATCTGTATAGCACCTTGTACATCATAGAAGCCTTTGAGTTTTAAGACTCCAAATCGCAAATCTAAAAGTATTTGTCAACTTCCCCTGAACCAATATTATAATGCCAACAATAGACCTTTATCATTTGCTATTTAAAGAATGTGATTCTTTGTTAAAACTTTGTACTGTATAGTGAGTGTATCgactgatatttaaaaatatttttatggatagatatatttaatagtaaCAATTCATAATTTgtgacaatattttaaatgaaaacgtATTTCTCTATGTATAAAAGATTATGGTTTTGTGAGTGGACAGAACTTTACACAGCaattggaaatacatttttgagggGGAAGTGTGTTTGCCCCGACGTTGATGTGTTTTTGATCGAGTGCGAACAGTGAGATCTCTGTGCAGACAGACGTGGGAAGCGAACGCAGGCCGCAGTGCGGGCGGTGGTCCGCCGGGCAGCTCGGCGTTTGGCACAGCAGTGTATGTCCTGGGAGGGTTACTGAATATCATCCACAAATGCATGGCATCAAATAGCCTTGTCAGTTTGGAGACTAATCTCTTTTCGGCGTGAAGCCAAACCGCACTTCATTCGGAGCTGGATGTTCCTCTCGTACCCAACTGTGTGTATGCAGTATTTGttccagaatttaaaaaaactttaaaatatgtatgaagtttaaaataactaatttgtaattttatctgtaatgtaaatagtgttatttcattaaaaagaaatgtaaaaaaacaaacatgattttttttttt

Function

GO: NA

KEGG:

id description
K11268 ESCO, ECO1; N-acetyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41149 lncRNA downstream 146906 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 182714 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 233307 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 533481 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 540282 12059624 ~ 12060251 (-) True G32784
TU41374 lncRNA upstream 490106 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 554589 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 641516 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 697656 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 1019439 13633286 ~ 13633502 (-) True G33092
AMCG00019287 mRNA downstream 95983 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019286 mRNA downstream 136541 12455079 ~ 12463992 (-) True AMCG00019286
AMCG00019288 mRNA downstream 155347 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019284 mRNA downstream 177213 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019279 mRNA downstream 461926 12078562 ~ 12138607 (-) True AMCG00019279
AMCG00019292 mRNA upstream 2300 12616147 ~ 12635259 (-) True AMCG00019292
AMCG00019303 mRNA upstream 325160 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019302 mRNA upstream 371900 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019301 mRNA upstream 394915 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019312 mRNA upstream 556025 13169872 ~ 13188292 (-) True AMCG00019312
TU39603 other downstream 7664537 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10421883 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10517262 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10517262 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10889990 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1048269 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1878044 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1878044 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2337995 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3078635 15692482 ~ 15721452 (-) True G33381

Expression Profile