RNA id: AMCG00019292


Basic Information

Item Value
RNA id AMCG00019292
length 2257
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00019292
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12616147 ~ 12635259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGACTGCTGCAGCCAGAGCCACCGCGCCGCACCGCCCCATCCCGCCTGTGCCCGCCTGTGCCCGCCTGTGCCCGCCTCACATTGCAGCTGCCCTCCACTCTCTCTGCACGCGTGGTACCTGGACCTGGCAATGAACACACTGGAGTTCAATTTCAACGTGTTGACGAGGGATCTGTCGCTTTATTGGGAGAATCAAGTGAAAGTTGGTCTGTTTGGCTCCGGAGTGGGACTGTCACTGGTGCTGGGTTTCAGCGCGGCGTATGCATATTACTACTTGAGCTCTGTGGCAAAGAAACCTCAGCTGGTTTCCGGGGGAAAGACGTTCCACCAGTTTCTTAAGGAGCAATGTCCGGTGCTTTCAGAAACATATTACCCCACTTTCTGGTGCTGGGAAGGACGGATCCAGACACTGATCAGACCATTCATTACTGCCAAGCCCTGGGTGGAGTACAGAAATGAGCTCCTTGGGATGGCAGACGGAGGACAGATTTCCCTGGATTGGTTTGATAATGATGACAGCGTGTGTTACCCTGACACCACCACTCGGCCCACAATCCTCCTGCTCCCCGGACTCACAGGGACCAGCATGGAGTCCTACATCCTCCATATGGTCCAGCAGAGCCAGGATCTGGGCTACAGatgtgTTGTGTTTAACAACAGAGGAGTGTCCAATGAGAGACTTTTGACTCCAAGGACGTACTGCGCTGCCAACACAGAGGACCTGGAGGCTGTCATCGATCACATCCATAGCACCATCGCTGGAGCTCCTCTGATGGCCGCCGGTGTCTCAATGGGGGGGATGATGCTGACTAACTACCTAGGGCGGAAAGGTCGGGAGACTTGCCTGCGAGCCGCTGCGGTCTTCTCCGCAGGATGGGATGTGTTTGAGTGCACCGCCTCGCTGGAAAAAACTCTGAACCGCTTTCTCTTCAACTCGTATTTAACCAGCTGCTTGCAGGCTTCTGTCAACAGaCACAGGCAAATTCTTGAGAAGCTTTTTGATATCGACCATATAATGAAGGCAAAAACTATAAGGGAGTTTGATGAGCGGTTTACTTCCATCATGTTTGGATACCCGACCAATGATGAGTATTACAGAGATGCCAGCCCCTGTCACAAGCTGAAGTCAGTGCAGATCCCTATGCTCTGCTTAAATGCAGCTGATGATGTCTTCTCACCAAGCCATGCTATTCCTGTGGAAGCTGTGAAACAGAACCCCAACCTAGCCCTCCTGGTAACTTCCCATGGGGGCCACATTGGGTTCTTGGAGGGACTGTGGCCACGGCAGAGCACCTACATGGATCGGGTCTTCAGGCAGTTCGCTAAGGGTGTCTTTGAGCACGGAAGAAAGCTTGAGGATCTCTAACATCTCAAACCAGCAGTTCCTTTTGTCTAGCCATGCAAAAATTCAAAAAATCTCTCTGAAGGGCACATCAATACCAACGCACAAGATGTACGTAAATTCAGTGTTAAAACAAAGATGCCAGTAGAAATCACCTGAACATTTACTTGAACATGCTGCAATGTTTAACAGCACTTCTTTCATTTCTGTCTACACAAGTCTGTAGTGAGTGTGAATCCTGCATTGggaattaattacaatttttaagttaaaagcagtactgtataattaattttactCTAAATTACCTCTTATTACAAATCAAACTCTTAACAGTATTAACAGTAGACATAGTCCtcagggattttgttttattgtgtataatAGTTATTTCTtgtcttaatgtttttttaagaccacttttttctcatttatctCAAACAAGACCACAGTCAGTATTTTACATTCTCTTTTGAAATTATATGCTAATAATGCACTTTTTCACACATTGTAGCACTGCATACACCAAATAGCTAAAATTATATGTAAACTGTCTGACAGAAAAATGATTTTAGTAATTCATGaacaggaatgtgaaaatgcacTATTTTTGTTGAAGtaattctttaaaacaaatgcacttaTCTCATGGGATTTTGATTTCAGTTGCATGAATCACTGACAGTAACGACTAAAAATAAGCATTGTACTGTAATGAGTAGCACAATGTTAGGCTTATTTTATACCTCTGCTAATGTATATTGATAAGTACATGATGGAAGGTGGAATTGAACATGTTCATGCAGCAATAAGattttaatgtaaacaaatatgtatgttaatgaatgcatatgtatatatagatatatattatatatgcatttcctgtatttaataaattataaagtaAATA

Function

GO: NA

KEGG:

id description
K13696 ABHD1_3; abhydrolase domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41149 lncRNA downstream 162520 12452597 ~ 12453627 (-) True G32844
TU41125 lncRNA downstream 198328 12414106 ~ 12417819 (-) False AMCG00019284
TU41123 lncRNA downstream 248921 12366786 ~ 12367226 (-) True G32825
TU41072 lncRNA downstream 549095 12062278 ~ 12067052 (-) True G32786
TU41067 lncRNA downstream 555896 12059624 ~ 12060251 (-) True G32784
TU41374 lncRNA upstream 468694 13103953 ~ 13106250 (-) True G33030
TU41434 lncRNA upstream 533177 13168436 ~ 13171846 (-) False AMCG00019312
TU41440 lncRNA upstream 620104 13255363 ~ 13257313 (-) True G33070
TU41446 lncRNA upstream 676244 13311503 ~ 13311800 (-) True G33076
TU41464 lncRNA upstream 998027 13633286 ~ 13633502 (-) True G33092
AMCG00019291 mRNA downstream 2300 12600533 ~ 12613847 (-) True AMCG00019291
AMCG00019287 mRNA downstream 111597 12466126 ~ 12504550 (-) True AMCG00019287
AMCG00019286 mRNA downstream 152155 12455079 ~ 12463992 (-) True AMCG00019286
AMCG00019288 mRNA downstream 170961 12442688 ~ 12445186 (-) True AMCG00019288
AMCG00019284 mRNA downstream 192827 12413154 ~ 12423320 (-) True AMCG00019284
AMCG00019303 mRNA upstream 303748 12939007 ~ 12965910 (-) True AMCG00019303
AMCG00019302 mRNA upstream 350488 12985747 ~ 13006328 (-) True AMCG00019302
AMCG00019301 mRNA upstream 373503 13008762 ~ 13018024 (-) True AMCG00019301
AMCG00019312 mRNA upstream 534613 13169872 ~ 13188292 (-) True AMCG00019312
AMCG00019311 mRNA upstream 569165 13204424 ~ 13208267 (-) True AMCG00019311
TU39603 other downstream 7680151 4932838 ~ 4935996 (-) False AMCG00019129
TU38988 other downstream 10437497 2177980 ~ 2178650 (-) True G31130
TU38924 other downstream 10532876 1955668 ~ 2083271 (-) True G31082
TU38923 other downstream 10532876 2038647 ~ 2083271 (-) False G31082
TU38861 other downstream 10905604 1705899 ~ 1710543 (-) False G31035
TU41485 other upstream 1026857 13662116 ~ 13665230 (-) True G33106
TU41559 other upstream 1856632 14491891 ~ 14492218 (-) True G33163
TU41560 other upstream 1856632 14491891 ~ 14558290 (-) False G33163
TU41680 other upstream 2316583 14951842 ~ 14991996 (-) True G33259
TU41832 other upstream 3057223 15692482 ~ 15721452 (-) True G33381

Expression Profile