RNA id: AMCG00019296



Basic Information


Item Value
RNA id AMCG00019296
length 582
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00019296
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12905474 ~ 12916716 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGAAGACTGATCTCTCAGCGCTCGTCTCTGGAGACTCTTGAAGATATAGAGGAGAATGCCCCTCTACGCAGATGCCGCACTTTATCAGGTTCACCCAGACCAAAGAGTTTTAAGAAGGTTCACTTCATCAAGAATATGAGACAACATGACACCCGCAATGGAAGgaTAGTCCTAATCAGTGGCAGAAGATCCTTCTGTAGTGTATTTTCTGTGCTGCCCTATCGTGATTGTAGCCAAGCAGGGGACTTGAAATTAGAAGGTGGGCGTCAGCGCCACCCATCTGGAGGTGTCAGCGCCAAGGAAATGGTGATCGGACTGGAGGGTACCGTGTCCTATACCCAGTTCCTTTACTCTACCAATGCGCTGAGCGGCCGGAGGAACACCATCGATTCCACCTCCTCGTTCACCCAGTTCCGCAATGCCAGCCATCGTAGCCTTAGCCTGGCCAGGGCCAACAGCACACAGGGGAGCATTGACACAGGAAATGACATTGGAGACTTCATGGAGTATGACCCCAACCTCCTGGATGATCCCCAGTGGCCATGTGGGAAGCACAAGAGAGTGCTCATATTCCCTTCGTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU41212 lncRNA upstream 291548 12613285 ~ 12613926 (+) True G32893
TU41211 lncRNA upstream 292941 12609401 ~ 12612533 (+) True G32892
TU41061 lncRNA upstream 904310 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 1267594 11632358 ~ 11637880 (+) True G32674
TU41445 lncRNA downstream 394698 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 716986 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1236086 14152802 ~ 14160703 (+) True G33141
TU41546 lncRNA downstream 1368849 14285565 ~ 14286016 (+) True G33153
TU41557 lncRNA downstream 1575176 14491892 ~ 14492206 (+) True G33161
AMCG00019300 mRNA upstream 22948 12881981 ~ 12882526 (+) True AMCG00019300
AMCG00019297 mRNA upstream 32420 12858980 ~ 12873054 (+) True AMCG00019297
AMCG00019295 mRNA upstream 126859 12767954 ~ 12778615 (+) True AMCG00019295
AMCG00019293 mRNA upstream 183264 12708565 ~ 12722210 (+) True AMCG00019293
AMCG00019289 mRNA upstream 234445 12641964 ~ 12671029 (+) True AMCG00019289
AMCG00019298 mRNA downstream 10066 12926782 ~ 12928334 (+) True AMCG00019298
AMCG00019294 mRNA downstream 54259 12970975 ~ 12977312 (+) True AMCG00019294
AMCG00019299 mRNA downstream 61583 12978299 ~ 12985783 (+) True AMCG00019299
AMCG00019305 mRNA downstream 90393 13007109 ~ 13030766 (+) True AMCG00019305
AMCG00019304 mRNA downstream 114936 13031652 ~ 13112713 (+) True AMCG00019304
TU40734 other upstream 2495977 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 3276812 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 3366263 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3556655 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4520882 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 1522537 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2247632 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3127226 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 7690758 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 7690758 20607474 ~ 20610889 (+) True G34170

Expression Profile