RNA id: AMCG00019297


Basic Information

Item Value
RNA id AMCG00019297
length 3310
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00019297
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12858980 ~ 12873054 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGCCCCTCTTCCCTGAACGCCCGCGACGCCTGGCCATGTGAGACCAGGGGGGAGTCACGCCAGAGCTGAAGATGAACAGCACAGGGGGGGGCTGCGGCAGCCCCAGCTCAGGTCTGCCCTTGGAGCCGTCCTGTGACCTCTTCAAAGACCTCTGGGCCAGACTGAAAGACTGCCATGACAGCGAAGTGCAAGGATTgcaagttaaaataaacaaactgaagaaGGAAAGATGCTTAGATGCTCAAAGACTGGAGGAGTTTTATACCAAAAATCAGCAGCTGAGGGAACTGCAGAAGGCACTTCAGGACAACGTGAAAGTTTTAGAGGATAGGGAGAAACCCCCACAGGCTGCAGAGGCCCCGGAGCAGGAGGAAGGCTTTATCCCGGACTCCCCCATCCAGCAGGTCTCCCACGCCATGGTTAATAAAATGAGACGTAAAAAGGACAGCAAGCTCGTCCGCTATTCTGAAAGACTTCCTCCCAGCAGTGAGAAATCACCACCCACTGATGAAAACCAGTCAGGCGGAGGTTATACCTCTAAAAAGCCGGCCTTAAATTTAACTGCTGTTGTTGCTGAAACACTTGGACTAGGAGTTCCTGAGGAGTCGgAATCACAGAGTGTTTTAGGCTCCTTCGGTAAAGACATTTCTCCGGCAGTGCAGGTGGCTCTTGAAAAGCAAGACAATGTTGGTACAAGACAGCAGTCTACTGATTCAGCAACCCTTAAGGAGAACAACCTGAGATACTTTGGGACACCTCCAGATTGTACCCAGAACAGGGAGTGGCTGATGCAGCAGAGGACTTCTCCAGTGTTTGGTAGTTCTGCAAGACCAGTTCAAAATCCAGACCGCAAGGACGAACACTCCCCACCTGTCTTAGGCAAGCAAGTGAAAATTGCTCCCCTTGTTAATCGACTCAAGTCAAAGACAGAAGACGTCCCCCGCATTGCACCACTCAGAATGGGAACTTCCAATGGGCATTCCTTGGAAAATGGGGAACAGACTAGAGGAAGTGCAAGCAACATGCAAATGCGAGTGAAAGACACCTCAAAGGCTGCGATTGTTCCCACAGAGCTGTGTCAAAACACTCCAGAGCTTCCCACTGTAAAGGTGTCTGGGCTAGACAGTGTGAAGAGGAAGAAAAGTGAGGAAGACCAGCCCTTTGACAGGAAAAATAAAGccgccagcagcagcagcagccaggaGAGCATCTTGGACGACGTAGCAGACAAGCCACTAGACCTGTCAGAGCGCCTGAATGGTGGCCGCTCTCAGGACAGGGAAAGCAAACCCGTTTCCAAGGACAGGCTAAAGCAGGCCACCCTGTTCGACATGCGCAAAGCCTCCCATAATTCCTCCCTTTCCCTCCTGAAGATGTACAACGGCAGCAGCCTGCCAAACATGGACTCGCAAGAGGATCCTTACTTGCAGGAAGCCATAAGGCAGTCTCTCGGTTACAAAACCAGAGATGGGACCCCAGAGAAGAAACCCACCCCAACAGTCTTCAGGGTCCCAGCAACTCCTCCAGGAAGCAAAATGGATCCAGACCAGCTGTTTGACATTAGGACACCAGACGTGCAAGAGCCAATCAGAAAGAAAAGCCGGGGATTGTCTAAAGACTGTGAACAAGCTTCAGTGCTGCAGCCCAACCCCTGTGCTGTTTCAAAGAGGAGCCCCCCACAGAGAGACGATGGTAAACCTGTCACAAGCAATATGACATGGAGCCTGGATCCAGGAGCGGACCTTTCCCAGTACAAGACAGATGCCTTATTAGACCAAGagTCTGAGCCTCACAGGTCTGAGGGCGAGACCATGGACACAGACTGTACCTTCATCAGCAACAGTGTGCTTCTCAAAGGATCGAAGCCAAGCAGGGTTTCAAACACCAGCTATGCTCTGGGCCAGAAAGCAAATGACAGCTTGGCAGAAATCTTTGACCGCACAGCCTATGGGGAATATGAGTCTtgtccactagatggcagtCCACAGGAAGCGGTGGGTCAGGCAGAGGACAGAGAGGAtgaagaggaggcagaggaCTCTGTGGACAtgTCTGAGGAAGTCACAAACATCCCACATCAAGCAGTGTATTACGCAGACCTGCCAGAAGGAGAGCGCCAGAAGAAGCTGTCGGCCTGCTCCCGGCACCGCTTCAGATACATCCCGCCCAGCACCCCCGAGAACTTCTGGGAAGTGGGCTTTCCGTCCACGCAGACCTGTGTAGACAGAGGGTATGTCAAAGAAGATATGAATCCTCTGCAGCGTACAAGAAGGAGGCGACCgtacaatgcaatgttttccCCTAAAGGCAAAGAGCAGAAGACATGATGGCTGTTTTTAGAAACtgagcaaaataaatcacaaaacagGCCAGTGTCTCTCTGATCGCAATAACAAATCTACAGTAAATGTTGCGGGAAGAATTGCAATTAATTGtacatacaaaatgttgcaTAAGACTGTGGACCTTGTATGGGAGCTTTTACTGCATCTCAACCacaaatggtttaaaaagaaaagctattGTATAAGACATTTCTGCTGCTAGAGGTTGTGTCTGGGAGTTATTTCAAGCAGAATTACTTGTCTTGGGCAAGCTTATCTAAAGGTGCTTCCACAATGTTAGATTAGCTGCTTCTCAATAATCTCCCTGCTTACAAAGGCAGGCATTGCAAAGACCGTGTTTACAGAGTCGAGTGTGAATGTGGCTTTTTTGATTACTTCTATTCACTATTGGATGAACGGGCAGATTTACTCAGAGCACAGTAATTCACTTGACTTTTAAGCAGATAAGTATTCCAAAGCCTTGTGCTTCAGTTCCAATCCCATTTGTAGTTCAAAAGGTCTTCACATTCGTACTAGAATTcaacagggttttgttttttgttgttgataatattatttattgtttatttaagtgttaatcaaaataagcaaagaaacaaaaatctcaTCTAATTTTGTTTATCTAATATTTTTGAGgagtgggttttgtttttacagtacaTATGAATAAGTGCTGTTGTGGATCAAATAACATGGAGAGCTATTGTCCTGTACTAGTGCTTCTCACAGCCCTGCTCTGGGGGGTTCAGGGAACTGAGCTGAGTACTGCCCAGACTTTGTCTAAGGGTCTCTGGAGGTGGCAGTTATGATAGGCTGGCACACAAGTTGTTTTTTCTCACTTCTCActgtttgcagtttttttttttttttttagaacacGTTAGCGGTTTCAAATCGGGGCCAAGACGTTTCTGAATGTCACTGATATTCTTCAAGTATAATTCATTTTGCACAGTATTTTTT

Function

GO: NA

KEGG:

id description
K20773 RBBP8, CTIP; DNA endonuclease RBBP8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU41212 lncRNA upstream 245054 12613285 ~ 12613926 (+) True G32893
TU41211 lncRNA upstream 246447 12609401 ~ 12612533 (+) True G32892
TU41061 lncRNA upstream 857816 12000963 ~ 12001164 (+) True G32778
TU40936 lncRNA upstream 1221100 11632358 ~ 11637880 (+) True G32674
TU41445 lncRNA downstream 438360 13311414 ~ 13311742 (+) True G33075
TU41465 lncRNA downstream 760648 13633702 ~ 13638171 (+) True G33093
TU41531 lncRNA downstream 1279748 14152802 ~ 14160703 (+) True G33141
TU41546 lncRNA downstream 1412511 14285565 ~ 14286016 (+) True G33153
TU41557 lncRNA downstream 1618838 14491892 ~ 14492206 (+) True G33161
AMCG00019295 mRNA upstream 80365 12767954 ~ 12778615 (+) True AMCG00019295
AMCG00019293 mRNA upstream 136770 12708565 ~ 12722210 (+) True AMCG00019293
AMCG00019289 mRNA upstream 187951 12641964 ~ 12671029 (+) True AMCG00019289
AMCG00019290 mRNA upstream 260463 12572727 ~ 12598517 (+) True AMCG00019290
AMCG00019280 mRNA upstream 404608 12446933 ~ 12454372 (+) True AMCG00019280
AMCG00019300 mRNA downstream 8927 12881981 ~ 12882526 (+) True AMCG00019300
AMCG00019296 mRNA downstream 32420 12905474 ~ 12916716 (+) True AMCG00019296
AMCG00019298 mRNA downstream 53728 12926782 ~ 12928334 (+) True AMCG00019298
AMCG00019294 mRNA downstream 97921 12970975 ~ 12977312 (+) True AMCG00019294
AMCG00019299 mRNA downstream 105245 12978299 ~ 12985783 (+) True AMCG00019299
TU40734 other upstream 2449483 10404639 ~ 10409497 (+) True G32539
TU40438 other upstream 3230318 9369898 ~ 9628662 (+) True G32293
TU40426 other upstream 3319769 9261374 ~ 9539211 (+) True G32286
TU40432 other upstream 3510161 9329479 ~ 9348819 (+) True AMCG00019215
TU40199 other upstream 4474388 8345455 ~ 8384592 (+) True G32130
TU41554 other downstream 1566199 14439253 ~ 14486706 (+) True G33159
TU41707 other downstream 2291294 15164348 ~ 15169841 (+) True G33283
TU41862 other downstream 3170888 16043942 ~ 16081943 (+) True G33406
TU42780 other downstream 7734420 20607474 ~ 20610889 (+) False G34170
TU42783 other downstream 7734420 20607474 ~ 20610889 (+) True G34170

Expression Profile